Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01066 ATGCACATGAAAGTTCCAATGGAGGAAAAGCCGTTTCCTGCATGGTCATGGTCAGTTGAGGAGTGTTTGAAAGAGTATGGTGTGAAACTGGACAAGGGTTTGAGTTCTAATGAGGTTCAGAAGCGGCGTGAGAAATACGGTTGGAACGAGCTAGCGAAAGAGAAGGGAAAGCCGTTATGGAAACTAGTGTTGGAACAATTTGACGACATGTTGGTGAAGATACTTTTGGTTGCAGCCTTCATATCGTTTCTTTTGGCATACGTTCAAGGAAGTGAATCGGGGGAGTCTGGATTCGAAGCTTACGTAGAGCCGCTCGTGATCATTTTGATCTTAGTCCTTAACGCGATTGTCGGAGTTTGGCAAGAGAATAATGCTGAAAAGGCTCTTGAAGCTCTTAAAGAGTTGCAATGCGAATCTATAAAAGTGTTGCGGGATGGATATTCGGTTCCTGATTTTCCTGCGCGAGAGCTTGTTCCGGGCGACATTGTTGAGTTGCATGTTGGGGATAAAGTCCCTGCTGACATGAGAGTTGCAGCTTTGAAAACCTCTACATTGAGATTGGAACAAAGCTCGTTAACCGGAGAAGCGATGCCGGTCCTCAAAGGCACGAATCCTATTTTCTTGGATGATTGTGAATTGCAAGCCAAAGAGAATATGGTATTTGCTGGCACAACAGTTGTCAACGGAAGCTGTATTTGCATTGTTATTACCACAGCAATGAACACTGAAATTGGAAAGATACAGAAACAAATACACGAAGCTTCGTTGGAGGAGAGCGATACTCCGTTGAAGAAGAAGTTGGACGAATTCGGTAGCAGGCTAACAACTTCCATTGGAATAGTTTGTCTTGTTGTGTGGATTATAAACTACAAAAATTTCATTTCTTGGGATATCGTCGATGGATGGCCTTCAAACATTCAATTTTCTTTTCAGAAATGCACTTACTATTTCAAAATTGCCGTTGCTCTTGCAGTGGCTGCAATACCAGAAGGTCTTCCAGCAGTTATTACAACATGTTTAGCGCTCGGTACAAGGAAAATGGCACAAAAGAATGCAATCGTTCGGAAGCTCCCAAGTGTTGAAACTTTGGGATGTACCACTGTGATTTGTTCTGATAAAACTGGCACGCTGACTACAAATCAAATGTCTGTCATGGAGTTCTTTACATTGGGAGGGAAAACCACTGCTTCTAGAGTCCTTAAAGTTGAAGGGACAACTTATGATCCAAAAGACGGAGGCATCGTTGATTGGACTTGCTATAACATGGACGCGAGTTTGTTAGCCATCGCAGAAATATGTGCTGTTTGTAATGATGCCGGTGTTTATTTTGACGGTCGCTTATTTCGAGCCACAGGTTTGCCAACTGAAGCTGCTCTCAAAGTTTTGGTTGAAAAGACGGGGTTTCCAGATATCAAGTCAAGGAACAAAACTCGCGACACGCAAGGTGCAGCAAACAACACGATGGATAGTAACACCGTGAAGCTAGGCTGTAGTGAGTGGTGGAATAGAAGATCCAAAAGGGTAGCTACGTTGGAGTTTGACCGAGTTAGAAAGTCAATGAGTGTTATTGTTCGCAAACCAGATGGTCAAAATCGGCTTCTTGTCAAGGGTGCTGTTGAGAGTTTATTGGAGCGAAGTTCGTTTGTGCAACTTGCGGATGGATCACTTGTTCCAATTGATGATCAATGTAGGGAAATACTTCTTCAAAGACTCCATGAGATGAGTTCGAAGGGGTTGCGCTGCTTGGGTTTGGCATGTAAAGATGAGTTGGGAGAGTTCTCAGATTATTATGCAGACACTCATTCTGCACACAAGAAATTGCTTGATCCAACATACTATTCCTCCATTGAAAGTGATTTAATTTTTGTCGGCGTTGTTGGTTTACGAGACCCTCCTAGAGAGGAAGTTCATAAAGCAATTGAGGATTGCAAGCAAGCTGGTATTAGAGTTATGGTAATAACCGGAGATAATAAGTCAACAGCCGAGGCTATTTGTAAGGAAATCGGACTTTTCTCAAGAGATGAAGATCTTACAGGTCAAAGTTTGACAGGTAAAGAATTCATGTCTCTTTCTCATTCAGAGCAAGTTAAATTACTGTTGAGAAATGGAGGCAAGGTTTTCTCGCGAGCCGAGCCTAGACACAAGCAAGAAATTGTGAGACTATTGAAGGAAATGGGAGAGATTGTTGCAATGACTGGAGATGGTGTGAATGATGCACCTGCACTTAAGCTTGCTGACATAGGGATTGCTATGGGAATAACTGGAACTGAGGTTGCAAAAGAAGCTTCCGATATGGTGCTTGCAGATGACAATTTTAGTACTATTGTTTCAGCTATCGCTGAGGGTCGAGCTATTTATAATAACATGAAAGCATTTATCAGGTACATGATATCGTCAAATGTCGGGGAAGTGATATCCATATTCTTGGCAGCTGCTTTAGGGATCCCAGAATGCATGATACCAGTACAACTTCTGTGGGTGAATTTGGTCACTGATGGTCCACCTGCAACAGCTCTTGGTTTCAACCCTGCAGATGTTGATATAATGCAGAAGCCACCTCGAAAAAGCGACGATGCCCTTATAAGTACTTGGGTTCTTTTTCGTTATCTAATAATTGGTTCCTATGTGGGAATCGCAACGGTTGGCATTTTTGTCTTGTGGTACACTCAAGCATCTCTTTTTGGCATCAATCTTGTTAGTGATGGACACACAATTATAGAATTGTCACAGCTTCTCAACTGGAGGGAATGTCCTTCATGGTCTAATTTTACAGTTTCTTCGTTTGACGCTGGTGGTGGTCGCTTGATCGCGTTTTCAAATCCTTGTGACTATTTTTCAGTTGGCAAAGTAAAGGCGATGACACTTTCTCTCTCTGTCTTGGTGGCAATTGAGATGTTCAATTCTTTGAATGCTCTATCAGAAGAAAATAGCTTGAGGACATTGCCACCTTGGAGGAATCCTTGGCTTTTGGTAGCCATGACAATATCTTTAGGATTACATTGCCTCATACTTTACATTCCATTCCTCTCTGAAGTGTTTGGTGTTGCTCCATTAAGTTTAAAGGAGTGGTTTTTGGTGATTTTGATATCAGCACCTGTTATTCTTATTGATGAGATTCTAAAATTAGTGGTGAGGAGTCAAAGGAAGAAGACAAAAGAGAAAGAAGCATGA 3171 0.421 MHMKVPMEEKPFPAWSWSVEECLKEYGVKLDKGLSSNEVQKRREKYGWNELAKEKGKPLWKLVLEQFDDMLVKILLVAAFISFLLAYVQGSESGESGFEAYVEPLVIILILVLNAIVGVWQENNAEKALEALKELQCESIKVLRDGYSVPDFPARELVPGDIVELHVGDKVPADMRVAALKTSTLRLEQSSLTGEAMPVLKGTNPIFLDDCELQAKENMVFAGTTVVNGSCICIVITTAMNTEIGKIQKQIHEASLEESDTPLKKKLDEFGSRLTTSIGIVCLVVWIINYKNFISWDIVDGWPSNIQFSFQKCTYYFKIAVALAVAAIPEGLPAVITTCLALGTRKMAQKNAIVRKLPSVETLGCTTVICSDKTGTLTTNQMSVMEFFTLGGKTTASRVLKVEGTTYDPKDGGIVDWTCYNMDASLLAIAEICAVCNDAGVYFDGRLFRATGLPTEAALKVLVEKTGFPDIKSRNKTRDTQGAANNTMDSNTVKLGCSEWWNRRSKRVATLEFDRVRKSMSVIVRKPDGQNRLLVKGAVESLLERSSFVQLADGSLVPIDDQCREILLQRLHEMSSKGLRCLGLACKDELGEFSDYYADTHSAHKKLLDPTYYSSIESDLIFVGVVGLRDPPREEVHKAIEDCKQAGIRVMVITGDNKSTAEAICKEIGLFSRDEDLTGQSLTGKEFMSLSHSEQVKLLLRNGGKVFSRAEPRHKQEIVRLLKEMGEIVAMTGDGVNDAPALKLADIGIAMGITGTEVAKEASDMVLADDNFSTIVSAIAEGRAIYNNMKAFIRYMISSNVGEVISIFLAAALGIPECMIPVQLLWVNLVTDGPPATALGFNPADVDIMQKPPRKSDDALISTWVLFRYLIIGSYVGIATVGIFVLWYTQASLFGINLVSDGHTIIELSQLLNWRECPSWSNFTVSSFDAGGGRLIAFSNPCDYFSVGKVKAMTLSLSVLVAIEMFNSLNALSEENSLRTLPPWRNPWLLVAMTISLGLHCLILYIPFLSEVFGVAPLSLKEWFLVILISAPVILIDEILKLVVRSQRKKTKEKEA 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01066 1056 Gene3D - 65 1045 - -
Vifa4g01066 1056 PRINTS P-type cation-transporting ATPase superfamily signature 624 635 - -
Vifa4g01066 1056 PRINTS P-type cation-transporting ATPase superfamily signature 756 768 - -
Vifa4g01066 1056 PRINTS P-type cation-transporting ATPase superfamily signature 370 384 - -
Vifa4g01066 1056 PRINTS P-type cation-transporting ATPase superfamily signature 646 656 - -
Vifa4g01066 1056 PRINTS P-type cation-transporting ATPase superfamily signature 188 202 - -
Vifa4g01066 1056 PRINTS P-type cation-transporting ATPase superfamily signature 732 751 - -
Vifa4g01066 1056 FunFam Calcium-transporting P-type ATPase, putative 625 777 - -
Vifa4g01066 1056 SFLD Haloacid Dehalogenase 351 785 - -
Vifa4g01066 1056 Pfam Cation transporting ATPase, C-terminus 817 1043 IPR006068 -
Vifa4g01066 1056 Gene3D - 367 777 IPR023214 -
Vifa4g01066 1056 PRINTS Sodium/potassium-transporting ATPase signature 985 1009 - -
Vifa4g01066 1056 PRINTS Sodium/potassium-transporting ATPase signature 363 384 - -
Vifa4g01066 1056 Pfam E1-E2 ATPase 135 350 - -
Vifa4g01066 1056 Pfam haloacid dehalogenase-like hydrolase 367 746 - -
Vifa4g01066 1056 FunFam calcium-transporting ATPase, endoplasmic reticulum-type 380 631 - -
Vifa4g01066 1056 FunFam Calcium-transporting ATPase, putative 217 366 - -
Vifa4g01066 1056 SFLD p-type atpase 351 785 IPR044492 -
Vifa4g01066 1056 SUPERFAMILY Calcium ATPase, transduction domain A 141 250 IPR008250 -
Vifa4g01066 1056 Pfam Cation transporter/ATPase, N-terminus 15 82 IPR004014 -
Vifa4g01066 1056 SUPERFAMILY HAD-like 368 836 IPR036412 -
Vifa4g01066 1056 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 377 628 IPR023299 GO:0000166
Vifa4g01066 1056 Gene3D - 32 254 - -
Vifa4g01066 1056 PANTHER CALCIUM-TRANSPORTING ATPASE 19 1053 - -
Vifa4g01066 1056 SMART Cation_ATPase_N_a_2 13 87 IPR004014 -
Vifa4g01066 1056 SUPERFAMILY Calcium ATPase, transmembrane domain M 13 1049 IPR023298 -
Vifa4g01066 1056 ProSitePatterns E1-E2 ATPases phosphorylation site. 372 378 IPR018303 -
Vifa4g01066 1056 Gene3D - 380 631 IPR023299 GO:0000166
Vifa4g01066 1056 FunFam ECA1 (ER-TYPE CA2+-ATPASE 1) 796 1050 - -
Vifa4g01066 1056 NCBIfam HAD-IC family P-type ATPase 307 395 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa4g01066 1056 NCBIfam HAD-IC family P-type ATPase 705 817 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Vifa4g01066 1056 FunFam Calcium-transporting ATPase, putative 117 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01066 Vifa-Chr4 309336647 309340531 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01066 8 1054 Primary Pumps ATPases(2) AT4G00900 77.831 0.0 1690
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01066 K01537 - gmx:100792952 1884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01066 4 309336647 309340531 Vifa4g01066 4 309336647 309340531 ECH