Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01062 ATGAGGCCGATTTTCGCTGGGAACTTGGAGTACGATACTCGTCAAGCGGAACTTGAACGCTTGTTCTCAAAGTATGGCAGGATTGAACGCGTGGACATGAAATCTGGATTTGCTTTTGTTTACTATGAAGATGAGCGTGACGCTGAAGAAGCAATCCGTGCTCTTGACAACATTCCATTTGGTTATGATAAGCGACGGCTATCTGTGGAGTGGGCTAGGGGTGAACGTGGGCGTCATCGTGATGGCTCAAAGGCAAACCAGAAGCCCACAAAAACTCTTTTTGTGATTAACTTTGACCCAATTCGCACTAGAGTTAGTGATATAGAGAGACACTTTAAACCTTATGGACAGCTTCATCATGTTCGAATTCGTCGCAACTTTGCATTTGTGCAGTATGAGACACAAGAAGATGCCACTAAAGCCTTAGAGTGTACAAATATGAGTAAGATACTGGACAGGGTGGTCTCTGTGGAGTATGCGCTGAGGGATGACAGTGAGAGGGTTGACAATTATAGCAGTCCCAGAAGAGGAGGAGGTCTTGCTAGATCTCCCAGTCCAGCATATCGCAGGCGAGCAAGTCCTGACTATGGCCGTCCACGTAGTCCTGTGTATGACAGGTATAGTGGACCAGACAGGCGGAGGAGTCCTGATTATGGAAGGAACAGGAGTCCTGATTATGGAAGGAACCGCAGTCCTGAATACGGCAGATACCGCAGTCGATCACCAGTGCGAAGGTCGAGAACTTAG 747 0.4766 MRPIFAGNLEYDTRQAELERLFSKYGRIERVDMKSGFAFVYYEDERDAEEAIRALDNIPFGYDKRRLSVEWARGERGRHRDGSKANQKPTKTLFVINFDPIRTRVSDIERHFKPYGQLHHVRIRRNFAFVQYETQEDATKALECTNMSKILDRVVSVEYALRDDSERVDNYSSPRRGGGLARSPSPAYRRRASPDYGRPRSPVYDRYSGPDRRRSPDYGRNRSPDYGRNRSPEYGRYRSRSPVRRSRT 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01062 248 MobiDBLite consensus disorder prediction 167 248 - -
Vifa4g01062 248 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 91 162 IPR000504 GO:0003723
Vifa4g01062 248 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Vifa4g01062 248 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 60 IPR000504 GO:0003723
Vifa4g01062 248 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 93 155 IPR000504 GO:0003723
Vifa4g01062 248 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 91 236 - -
Vifa4g01062 248 Gene3D - 1 84 IPR012677 -
Vifa4g01062 248 SMART rrm1_1 3 70 IPR000504 GO:0003723
Vifa4g01062 248 SMART rrm1_1 92 158 IPR000504 GO:0003723
Vifa4g01062 248 FunFam Serine/arginine-rich splicing factor RS31 1 84 - -
Vifa4g01062 248 FunFam Serine/arginine-rich splicing factor RS31 85 173 - -
Vifa4g01062 248 Gene3D - 85 172 IPR012677 -
Vifa4g01062 248 SUPERFAMILY RNA-binding domain, RBD 3 164 IPR035979 GO:0003676
Vifa4g01062 248 MobiDBLite consensus disorder prediction 205 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01062 Vifa-Chr4 308982645 308984823 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01062 4 162 Eukaryotic Initiation Factors Gene Family AT4G34110 24.713 3.22e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01062 K12893 - gmx:100797709 406.371
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01062 4 308982645 308984823 Vifa4g01062 4 308982645 308984823 ECH