Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01061 ATGTGCATCAGCCTACACTTATATTCAGGATTTGCTTTTGTTTACTATGAAGATGAGCGTGACGCTGAAGAAGCAATCCGTGCTCTTGACAACATTCCATTTGGTTATGATAAGCGACGGCTATCTGTGGAGTGGGCTAGGGGTGAACGTGGGCGTCATCGTGATGGCTCAAAGGCAAACCAGAAGCCCACAAAAACTCTTTTTGTGATTAACTTTGACCCAATTCGCACTAGAGTTAGTGATATAGAGAGACACTTTAAACCTTATGGACAGCTTCATCATGTTCGAATTCGTCGCAACTTTGCATTTGTGCAGTATGAGACACAAGAAGATGCCACTAAAGCCTTAGAGTGTACAAATATGAGTAAGATACTGGACAGGGTGGTCTCTGTGGAGTATGCGCTGAGGGATGACAGTGAGAGGGTTGACAATTATAGCAGTCCCAGAAGAGGAGGAGGTCTTGCTAGATCTCCCAGTCCAGCATATCGCAGGCGAGCAAGTCCTGACTATGGCCGTCCACGTAGTCCTGTGTATGACAGGTATAGTGGACCAGACAGGCGGAGGAGTCCTGATTATGGAAGGAACAGGAGTCCTGATTATGGAAGGAACCGCAGTCCTGAATACGGCAGATACCGCAGTCGATCACCAGTGCGAAGGTCGAGAACTTAG 669 0.4723 MCISLHLYSGFAFVYYEDERDAEEAIRALDNIPFGYDKRRLSVEWARGERGRHRDGSKANQKPTKTLFVINFDPIRTRVSDIERHFKPYGQLHHVRIRRNFAFVQYETQEDATKALECTNMSKILDRVVSVEYALRDDSERVDNYSSPRRGGGLARSPSPAYRRRASPDYGRPRSPVYDRYSGPDRRRSPDYGRNRSPDYGRNRSPEYGRYRSRSPVRRSRT 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01061 222 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 11 80 - -
Vifa4g01061 222 MobiDBLite consensus disorder prediction 141 222 - -
Vifa4g01061 222 FunFam Serine/arginine-rich splicing factor RS31 57 147 - -
Vifa4g01061 222 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 34 IPR000504 GO:0003723
Vifa4g01061 222 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 67 129 IPR000504 GO:0003723
Vifa4g01061 222 Gene3D - 6 57 IPR012677 -
Vifa4g01061 222 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 48 IPR000504 GO:0003723
Vifa4g01061 222 SMART rrm1_1 66 132 IPR000504 GO:0003723
Vifa4g01061 222 MobiDBLite consensus disorder prediction 179 214 - -
Vifa4g01061 222 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 65 136 IPR000504 GO:0003723
Vifa4g01061 222 Gene3D - 58 146 IPR012677 -
Vifa4g01061 222 SUPERFAMILY RNA-binding domain, RBD 9 139 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01061 Vifa-Chr4 308982645 308983728 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01061 10 127 Eukaryotic Initiation Factors Gene Family AT4G34110 27.200 2.92e-06 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01061 K12893 - gmx:100801043 341.658