Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01058 ATGGAAATGAATTCTGGGTCTGTTTTAGCATTGCATCCTACTTATAATGTTTTTAGAGCAAGGGAGCTTCTTGATTTTGAGGAGGATTTTGTAGAGAAAGATCCATCCGGCAGGTACATAAGGTACAATGAAATCTTGGGCAGGGGTGCCTTCAAGACTGTTTATAGGGCATTTGATGAAGTTGATGGCATAGAAGTTGCTTGGAACCAAGTTAGGATCAATGGTCTCTTGCATTCAGTAGACGATCTTGCGAAATTGTATTCCGAAGTTCATCTATTGAAGGCTTTAAAACATGAAAATATCATTAAGTTCTACGATTCCTGGATTGACGATAAGCAGAAAACTGTTAACATGATCACCGAGCTCTTCACATCTGGAAACTTAAGACAGTACCGTAAGAAGCATAAATACGTTGAAATGAAAGCTATAAAATGTTGGGCGAGACAGATTCTTCAAGGCCTAGCATATCTTCACAGTCACAAGCCACCTATTATTCACCGAGACTTGAAATGCGACAACATCTTTGTGAATGGAAACCAAGGAGAAGTTAAGATAGGTGATCTCGGTTTGGCAATCGTCATGCAGCAGCCAACTGCCCGGAGTGTTATTGGGACGCCTGAGTTTATGGCCCCTGAATTATATGAAGAGGAGTACAACGAACTCGTCGACATCTATTCTTTTGGAATGTCAATGTTGGAGATGGTTACTCTCGAGTATCCCTATAATGAATGCAACAACCCAGCTCAAATATTTAAGAAAGTTACCTCGGGCATCAAACCCGCGTCCCTTAATAAGGTGAGTGACCCCGAAATTAAGGAGTTTATCGAGAAATGCCTGGTTCCAGCATCTGAGAGATTGTCTGCGGAGGAGCTTCTTAAAGATCTATTTTTACAAATTGAGAGTCCAAAGGATCCATTCTCGTCTCATATTAAAACTCCAAGTGCTACAGATATTTCCAAGTCTCGTTCTCCATCTATGGACATCGATGCTGACTACAAACAGTTTTCCGAGAGTATCTATGCTGAAAGCAACCAGGAAATCTTACACTATCCTGTTTTTGAAGTCCAAAGGACTAATAAAAATAACGAGTTTCGGTTAAAAGGGACTAAAAATGATGATAACTCGGTTTCATTGACCTTGCGTATTGCTGATACATGTGATACTGCCGTCTCCGTGGCCTCAGAGATGGTTGAACATTTGGAGCTGGCGGATCATGACGTGGCTTTCATAGCCGGCCTTATTGATTACTTGATAATGAAGCTTCTTTCTTGGATGAAACCGTCGCACGATCATAGCTCAGTTGGAGAAATAAGTCTTTATAGTGGTTCTACAAATGTCGATAGCCAAGTCTCAACTAATGTTCCCTCCGAAACAGTTAGTGGTCAAGACAGCTTTTCCGGGTTTAATATAATGCCTAGAGAAGGTTTTGAGACAGCTGGAAAGAGCTTTTCTTACAAAAACGCCGATAACACCATTTTCGAGAGTGCCTTTGATTCATCTCCTCGTTTGATTGACTCAGAAGATGGATCAGGAACTTCTGAGATAACTGTTGATGATGCTTCGATGAAAAATGACAATTGTCATGATTCCAAATATCTCGGTGTTGGATGTTTTAAATGCTTTAGAAGGCCGATAACCGAGCTTGAGGCCGGGGACACGTATTTCGAAGACTGTAAGTCGCAGGCAACAGATTACAATGTTAATAAAAGCAATGCGAACTCGAGATCACCAAACATTATGAGCTTGTTAGGTAGCTGTTGCTCTTCTATGTCTTACACCCAAAAGGATATTGATCTCGAGTTAAAGCTTGAACTTGATGCAATTGAGTCGCAATATCAGCATTGGTTTGAGGAACTCACTAGAATGAAACTGGAGGCAATGGAAGCAACCAGAAAGAGATGGATGGCCAAGAAAAAGTAA 1920 0.4094 MEMNSGSVLALHPTYNVFRARELLDFEEDFVEKDPSGRYIRYNEILGRGAFKTVYRAFDEVDGIEVAWNQVRINGLLHSVDDLAKLYSEVHLLKALKHENIIKFYDSWIDDKQKTVNMITELFTSGNLRQYRKKHKYVEMKAIKCWARQILQGLAYLHSHKPPIIHRDLKCDNIFVNGNQGEVKIGDLGLAIVMQQPTARSVIGTPEFMAPELYEEEYNELVDIYSFGMSMLEMVTLEYPYNECNNPAQIFKKVTSGIKPASLNKVSDPEIKEFIEKCLVPASERLSAEELLKDLFLQIESPKDPFSSHIKTPSATDISKSRSPSMDIDADYKQFSESIYAESNQEILHYPVFEVQRTNKNNEFRLKGTKNDDNSVSLTLRIADTCDTAVSVASEMVEHLELADHDVAFIAGLIDYLIMKLLSWMKPSHDHSSVGEISLYSGSTNVDSQVSTNVPSETVSGQDSFSGFNIMPREGFETAGKSFSYKNADNTIFESAFDSSPRLIDSEDGSGTSEITVDDASMKNDNCHDSKYLGVGCFKCFRRPITELEAGDTYFEDCKSQATDYNVNKSNANSRSPNIMSLLGSCCSSMSYTQKDIDLELKLELDAIESQYQHWFEELTRMKLEAMEATRKRWMAKKK 639
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01058 639 Gene3D Transferase(Phosphotransferase) domain 1 123 301 - -
Vifa4g01058 639 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 25 620 - -
Vifa4g01058 639 Gene3D Phosphorylase Kinase; domain 1 24 121 - -
Vifa4g01058 639 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
Vifa4g01058 639 Pfam Protein kinase domain 43 296 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01058 639 SUPERFAMILY Protein kinase-like (PK-like) 42 340 IPR011009 -
Vifa4g01058 639 SMART serkin_6 40 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01058 639 FunFam Probable serine/threonine-protein kinase WNK1 25 121 - -
Vifa4g01058 639 CDD STKc_WNK 38 297 - -
Vifa4g01058 639 Coils Coil 624 639 - -
Vifa4g01058 639 ProSiteProfiles Protein kinase domain profile. 40 297 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g01058 639 FunFam probable serine/threonine-protein kinase WNK9 123 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01058 Vifa-Chr4 308597085 308600818 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01058 27 639 MAP Kinase Kinase Kinase AT5G41990 47.209 2.11e-173 503
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Vifa4g01058 Pkinase 4.9e-52 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01058 K08867 - gmx:100272197 859.366
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01058 4 308597085 308600818 Vifa4g01058 4 308597085 308600818 ECH