Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01052 ATGGGAAGAGCTCCATGCTGTGCCAAAGTTGGATTGCACAAAGGTCCATGGACTACTAAAGAAGATGCATTGCTCACAAAATATGTTCAAGCTCATGGAGAAGGTCAATGGAAATCACTTCCCAAAAAAGCTGGACTTCTTAGATGTGGAAAAAGTTGTAGACTTAGATGGATGAATTATCTTCGACCAGATATAAAAAGAGGAAACATAACACAAGAAGAAGATGATCTTATAATAAGATTACATTCACTTCTCGGAAATAAATGGTCACTTATAGCTGGAAGATTACCGGGAAGAACAGACAACGAAATAAAAAACTATTGGAACACACATCTCCTGAAAAAGTTGCAAAGAAATGAACAAACATCCGAACATGATAATGAAGACCAACAAAGAAAAACCAAGAAAAACAACAACGTTGGTGGCAACAAAAAGAAGAAGAATAATAATAACAAACAAAAGAAAAACGACAAGAAAAAAGGTAAAAGTAAAATTAATGATGATGAAGAGGAAGACAAAATTCAAGTTTATTTACCAAAAGCTATTAGGATTAAGGCTTTAACTTTACCAAGAACAGATAGTGGTTCATTTACGTTTGAGTCAAATTCTTCATCTGAAAGCCAACAAAAACAAGGAAATGAGCAAGTGACAAACAACAACGTTGTTTGTGAGGTTGGTGAGATTGGTGAAAATGACAGATTTGGGTTCTGTAGTGATGACCATGACTTAGTCAACGATATTGAGTGCGAATCATTTTTCGACACGGGTAACAATCGTGGAACACTAGAGAGACTCTATGATGAATATTTCCAGCTCTTGAATGTGGATGGTATTTGCAATTTCGAGTTTGATTCTTTTGCTGAATCAATCTTTAATTGA 879 0.3504 MGRAPCCAKVGLHKGPWTTKEDALLTKYVQAHGEGQWKSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNITQEEDDLIIRLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHLLKKLQRNEQTSEHDNEDQQRKTKKNNNVGGNKKKKNNNNKQKKNDKKKGKSKINDDEEEDKIQVYLPKAIRIKALTLPRTDSGSFTFESNSSSESQQKQGNEQVTNNNVVCEVGEIGENDRFGFCSDDHDLVNDIECESFFDTGNNRGTLERLYDEYFQLLNVDGICNFEFDSFAESIFN 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01052 292 Coils Coil 113 133 - -
Vifa4g01052 292 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vifa4g01052 292 MobiDBLite consensus disorder prediction 195 217 - -
Vifa4g01052 292 SMART sant 13 63 IPR001005 -
Vifa4g01052 292 SMART sant 66 114 IPR001005 -
Vifa4g01052 292 CDD SANT 16 61 IPR001005 -
Vifa4g01052 292 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 211 - -
Vifa4g01052 292 MobiDBLite consensus disorder prediction 138 159 - -
Vifa4g01052 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vifa4g01052 292 Gene3D - 14 66 - -
Vifa4g01052 292 MobiDBLite consensus disorder prediction 118 135 - -
Vifa4g01052 292 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vifa4g01052 292 Coils Coil 151 171 - -
Vifa4g01052 292 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vifa4g01052 292 Gene3D - 71 142 - -
Vifa4g01052 292 FunFam Myb transcription factor 11 67 - -
Vifa4g01052 292 CDD SANT 71 112 IPR001005 -
Vifa4g01052 292 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vifa4g01052 292 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vifa4g01052 292 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vifa4g01052 292 MobiDBLite consensus disorder prediction 118 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01052 Vifa-Chr4 306283097 306284148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01052 1 116 MYB Transcription Factor Family AT4G38620 76.724 1.51e-64 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa4g01052 Myb_DNA-binding 8.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01052 K09422 - gmx:100101857 340.117