Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01044 ATGGCACATCTTGAGTGTAATCTGAGGGGCCCAGGAATTTCTCAACAAGAAAAAGGTGTTAAAAATGATTTGTATGAAGAGTTATGGAAGTTGTGTGCAGGACCTTTGGTGGATGTTCCAAACACTGGTGACAGAGTTTTCTACTTTCCTCAAGGTCACATGGAACAACTTCAAGCATCTACTGATCAGGAACTGAACCAGGAAATTCCTCATTTCAATCTACCGTCGAAGATTTTATGCCGCGTTGTCAACATTCAGTTGAGGGCGGAACAAGAAACTGATGAGGTTTACGCTTGTGTTGCTTTGCTTCCAGAATCAGATCAAACTGAACCTGCAGAGCCTGATCCAATTCCTCCAGAGTCTCCTAAACTAAAGTTTCACTCGTTTTGCAAAATATTAACTGCTTCTGATACTAGTACACATGGAGGATTTTCAGTTCTGAGGAAGCATGCTACGGAGTGCTTGCCGCCATTGGATATGACACAAGCAACTCCTACTCAGGAGTTAGCTGCGAAGGATCTTCATGGATTTGAGTGGAAGTTTAAGCACATATATAGAGGCCAACCAAGACGACACTTGCTTACAACCGGTTGGAGTACTTTTGTCGCCTCCAAAAGATTGGTTGCCGGAGACGCATTTGTTTTTCTAAGGGGAGAAAACGGGCAATTGAGAGTGGGCGTTAGGCGTATGGCTAAGCAACACAATCCAATGCCTTCATCTGTAATATCAAGCCAAAGCATGCATCTCGGAGTTCTTGCCACTGCTTCTCATGCTCTTATGACTCGTACCATGTTCGTCATTTATTACAAACCAAGGACTAGTCAATTTATCGTTGGCTTGAACAAGTATTTGGAGGCAGTCAACAATAGTAAGTTTACGGTTGGTATGAGATTCAAGATGAGATTCGAAGGAGAAGATACACCTGAAAGAAGATTTTCTGGCACTATTGTTGGTGTTGGGGATTTTTCTGCAGGATGGTTGAATTCTCATTGGAGGTCATTGAAGGTTCAATGGGATGAACCAGCAACAATTCCAAGACCCGACAGAGTTTCTTCATGGGAGATAGAACCTTTCATAGCTTCTCCTCCTTTGAATGTCACTCAAGCATCAATCAAGAGCAAGAGATCTCGACCTGCCGATGTTTCATCTTCCGGTTTTTGGTATCCCAAATCGTCCCAAGTTCACGAGCTTCCTCAAAAATCCGGGTCTGTCGAAGTCCAAACCAAGGAGAATCAGATTATAACCTCTAGAGCCACGACGGAAGCAATTTGGCCTAATTCACCACATTTGAATCTCACTTCAAACCCTTATGCTAACATAAACATTGCATCTAAACCAAGCAACGGCCCTACATGCCATCATCAACGAGTCGAAGACGCGAAAAAGAATACAAATCCCTTAGATTGTTGGTTATTCGGAGTTAACTTAAACAACAACAACAACAAACCGAACAACATTGTTAATTCTTGTTTAGAAAAGAAAGAACATGGATTTCCAAAGTTAACCATTGTTACTACTACAAGTGGTCCCAAAGAATCTATTATCCTTACAAATGCATGTGAAACTGAAAAGGCTCAGAGTCCCAACTATTCACTGTCCACCATAGGGCAGCAGAAGAAAATTATTTCTGATACATCAACAAATGAATGGCAGAACAAGCTGGCCAATGTACCATCCATGAGAACAAGGACTAAGGTACAAATGCAAGGCGTAGCGGTTGGTCGTGCACTCGATTTGAGCTTGTTAAGTGGTTATGATGAACTCATTGATGAAGTTGAGAAACTGTTTGATATTAAAGGAGAGTTAAGGTCACAAAATAAATGGAGAGTTACTTTCACTGATAATGAAAATGACATGATGCTTGTTGGTGATGATCCATGGCAGGAATTTTGCAACATGGTGAAAAAGATTTTCGTTTGTTCAAATGAAGAGTTAAAGAAAATGAAATGCAAGTTACCTAATTCTTCATTAGAGATTGAAGAGACATTGTTGAGTTTAGATTCACAAAATAGGGAGGAGATTCAACAAACTCATGTGATTTAA 2043 0.4077 MAHLECNLRGPGISQQEKGVKNDLYEELWKLCAGPLVDVPNTGDRVFYFPQGHMEQLQASTDQELNQEIPHFNLPSKILCRVVNIQLRAEQETDEVYACVALLPESDQTEPAEPDPIPPESPKLKFHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMTQATPTQELAAKDLHGFEWKFKHIYRGQPRRHLLTTGWSTFVASKRLVAGDAFVFLRGENGQLRVGVRRMAKQHNPMPSSVISSQSMHLGVLATASHALMTRTMFVIYYKPRTSQFIVGLNKYLEAVNNSKFTVGMRFKMRFEGEDTPERRFSGTIVGVGDFSAGWLNSHWRSLKVQWDEPATIPRPDRVSSWEIEPFIASPPLNVTQASIKSKRSRPADVSSSGFWYPKSSQVHELPQKSGSVEVQTKENQIITSRATTEAIWPNSPHLNLTSNPYANINIASKPSNGPTCHHQRVEDAKKNTNPLDCWLFGVNLNNNNNKPNNIVNSCLEKKEHGFPKLTIVTTTSGPKESIILTNACETEKAQSPNYSLSTIGQQKKIISDTSTNEWQNKLANVPSMRTRTKVQMQGVAVGRALDLSLLSGYDELIDEVEKLFDIKGELRSQNKWRVTFTDNENDMMLVGDDPWQEFCNMVKKIFVCSNEELKKMKCKLPNSSLEIEETLLSLDSQNREEIQQTHVI 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01044 680 CDD B3_DNA 127 229 IPR003340 GO:0003677
Vifa4g01044 680 FunFam Auxin response factor 291 362 - -
Vifa4g01044 680 SUPERFAMILY DNA-binding pseudobarrel domain 123 258 IPR015300 -
Vifa4g01044 680 ProSiteProfiles PB1 domain profile. 561 642 IPR000270 GO:0005515
Vifa4g01044 680 FunFam Auxin response factor 556 649 - -
Vifa4g01044 680 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 22 649 IPR044835 GO:0003677|GO:0006355|GO:0009725
Vifa4g01044 680 Gene3D - 126 230 IPR015300 -
Vifa4g01044 680 FunFam Auxin response factor 127 231 - -
Vifa4g01044 680 Pfam B3 DNA binding domain 129 229 IPR003340 GO:0003677
Vifa4g01044 680 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677
Vifa4g01044 680 SUPERFAMILY CAD & PB1 domains 556 637 - -
Vifa4g01044 680 Gene3D - 291 361 - -
Vifa4g01044 680 Pfam Auxin response factor 255 335 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Vifa4g01044 680 Gene3D - 557 649 - -
Vifa4g01044 680 Pfam AUX/IAA family 558 641 IPR033389 -
Vifa4g01044 680 SMART B3_2 129 231 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01044 Vifa-Chr4 303501719 303505607 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01044 24 648 B3 DNA Binding Superfamily AT4G23980 56.270 0.0 654
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Vifa4g01044 B3 7.1e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01044 K14486 - gmx:100795763 992.645