Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01042 ATGGAGAAGCACGATTTGAACTTCACACAAACAGATGACGTGGCAGTAAAAACCGTTACAGCTAAAACCGTTACATCCGAAAATTCCGCCGCGAATTCCGGAAACGTCCGTGGCGGAACGCGGCATCCAGTTTATCATGGCGTCCGGAAACGGCGGTGGGGGAAATGGGTGTCGGAAATTCGAGAGCCGCGGAAGAAGTCGCGGATATGGTTAGGCTCTTTTCCGGCGCCGGAGATGGCGGCCAAGGCTTACGACGTTGCTGCGTACTGTTTGAAAGGGCGTAAGGCGCAGCTTAATTTTCCCGATGAAGTGCACCGTCTTCCGTTGCTTCCTCCGCCGGATTTGTGTACGGCTAGGGATATTCAGGCAGCGGCGGCTAAAGCAGCTCGCATGATGGTTACAAAAGCGGAGAATGGGAGCATTGATTCCGGTGGTGGTGGTGGTGGTGATGATTTTTGGGGGGAGATTGAGTTGCCGGAGCTTGTGAACGGATCGTGGTGGACTTACTCTGTTAATGTTGCGGCGGTGCCGGAGATTGAACTTCCATAG 549 0.5373 MEKHDLNFTQTDDVAVKTVTAKTVTSENSAANSGNVRGGTRHPVYHGVRKRRWGKWVSEIREPRKKSRIWLGSFPAPEMAAKAYDVAAYCLKGRKAQLNFPDEVHRLPLLPPPDLCTARDIQAAAAKAARMMVTKAENGSIDSGGGGGGDDFWGEIELPELVNGSWWTYSVNVAAVPEIELP 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01042 182 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 27 137 - -
Vifa4g01042 182 FunFam Ethylene-responsive transcription factor 2 43 102 - -
Vifa4g01042 182 PRINTS Ethylene responsive element binding protein signature 83 103 IPR001471 GO:0003700|GO:0006355
Vifa4g01042 182 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Vifa4g01042 182 CDD AP2 45 102 IPR001471 GO:0003700|GO:0006355
Vifa4g01042 182 Gene3D AP2/ERF domain 44 102 IPR036955 GO:0003700|GO:0006355
Vifa4g01042 182 SMART rav1_2 44 107 IPR001471 GO:0003700|GO:0006355
Vifa4g01042 182 SUPERFAMILY DNA-binding domain 44 103 IPR016177 GO:0003677
Vifa4g01042 182 Pfam AP2 domain 43 93 IPR001471 GO:0003700|GO:0006355
Vifa4g01042 182 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01042 Vifa-Chr4 302304852 302305400 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01042 40 175 AP2-EREBP Transcription Factor Family AT1G01250 68.613 7.95e-54 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vifa4g01042 AP2 7.6e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01042 K09286 - gmx:100802845 221.861