Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01041 ATGAAGATTGAAGTGGGTTTAGGAGGAAATGGGTTATGGAATGAAGATGAAAAAGCTATGGTGGTTGAAGTTTTGGGTGTCAAAGCATTTGATTACTTGGTTACAAAATCAGTTTCTAATGAGAATCTTTTGATGGCTATTGGAAGTGGTGAGAATCTTCAAAACAAGCTTTCTGATCTAGTTGAGAGATCCAACGTTTCGAATTTCAGTTGGAATTATGCCATTTTTTGGCAAATTTCTCAGTCAAAATATGGTGATTGGGTTTTAGGTTGGGGAGATGGGTGTTGTAGGGAACCAAAGGAAGAAGAAGAAAGAGATTTAGGAATGAAAAGTGTTGTGAGTGTGAATTCCATTGAGGATGAAAAGCAACAAAGATTGAGGAAAAGGGTGTTGCAGAAGCTTCATACAACATTTGGTGGTTCTGATGAAGACAATTATGCCTTTGGATTGGACCGAGTTACCGATACCGAGATGTTCTTTCTTGCTTCAATGTATTTCTCTTTTCCTAATGGAGATGGTGGACCTGGTAAGTGTTTTGCATCTGGGAAGCATTTGTGGTTGTGTGATGCATTGAAATCTAGTAGCTCTGATTATTGTGTTAGGTCTTTCTTGGCTAAATCGGTTGGATTTCAAACTATTGTTTTAGTTCCTACTGATTTAGGTGTTGTTGAATTGGGTTCTGTTAGAATGGTAGATGAAAGCTTTGAGTTGTTGCAAAAGGTTAAATCAGTGTTTTCGACACAATCATCGCTTTCTAGGGTTCAGTCGATTTCATCGTTGGATGAAAAAAGAGATGAGAATGGGAATGAGAATGAGAATGCCCCGTTTTCGTGTTTGAAAGTTGGTGAGAGTATTAAGAAGAACGATATTAGTAATGGTAATCTTCATCTTCGTCCGAATAATAATAATCATAATCATAGTAGAGTAGAGGTGATTGGAGTTCCGAAGATTTTCGGGCAGGATTTGAACTCAGTGACACATTTTCGGGAGAAACTTGCTGTTAGGAAAATGGATGAGAGGCCATCGTGGGGAGTCCGTCCGAATGGAAATGGAATTAGTTTTCCGAACGGCATTCATGGTTTGTCGGGTTGGAGACCTAGTCAAGTTGTGAGGCAGCATGTGCCTGCAGATGTTTTTGCTCCTAGGCCTTCGACGAGCAATGCGCCCGAGCTAGCCAATGGCGGTGGGAGGCATGATTTCGTGCTAAACAACTATCAACAGCAACAGCAACGGAAGGCGCAAATGCAAATTGATTTCTCCGGAGCCACATCAAGGCCTTCTGTGAGATCGATAGTCGGTGAATCAGAGATTTCTGACGTTGAGGCCTCTTGCAGGGAGGATGCACCGAGTCCCTCCGATGATAGGAGGCCGAGGAAGCGAGGTAGAAAGCCAGCTAATGGAAGAGTAGAACCTCTTAATCATGTGGAGGCAGAGAGACAAAGACGCGAGAAGCTAAACCAGCGTTTTTACGCCTTACGAGCTGTTGTGCCGAATATCTCCAAGATGGACAAAGCATCTTTGTTAGGAGATGCTATCGCGTACATCAACGAGCTTCAAGCAAAACTCAAGACAATGGAATCCGAAAGAGAACAACTTGCAACCACTTCTAGAGACGGATCATCATCGGGATTACCAACAAACTCTAGACCGGAAAATCATCAAAGCAAAACTCCCGAAATCAACATTCAAGCTACACAAGAAGGCGTCATCGTAAAGGTCAGTTTCCCTACTGATGTTCACCCTATTTCAAAACTCATCCAAGCATTCAAAGACACCGAAATCACTATCCTTGAGTCCAAACTCAACGCTACAAACGACACTGTCTTCCACACATTCATAATCAAGTCCCAAAAATCCGAGCAGCTTACAAAGGAGAAGTTAATCGCAGCATTTTCCAAAGAATCAAACTCCTTATAG 1917 0.4204 MKIEVGLGGNGLWNEDEKAMVVEVLGVKAFDYLVTKSVSNENLLMAIGSGENLQNKLSDLVERSNVSNFSWNYAIFWQISQSKYGDWVLGWGDGCCREPKEEEERDLGMKSVVSVNSIEDEKQQRLRKRVLQKLHTTFGGSDEDNYAFGLDRVTDTEMFFLASMYFSFPNGDGGPGKCFASGKHLWLCDALKSSSSDYCVRSFLAKSVGFQTIVLVPTDLGVVELGSVRMVDESFELLQKVKSVFSTQSSLSRVQSISSLDEKRDENGNENENAPFSCLKVGESIKKNDISNGNLHLRPNNNNHNHSRVEVIGVPKIFGQDLNSVTHFREKLAVRKMDERPSWGVRPNGNGISFPNGIHGLSGWRPSQVVRQHVPADVFAPRPSTSNAPELANGGGRHDFVLNNYQQQQQRKAQMQIDFSGATSRPSVRSIVGESEISDVEASCREDAPSPSDDRRPRKRGRKPANGRVEPLNHVEAERQRREKLNQRFYALRAVVPNISKMDKASLLGDAIAYINELQAKLKTMESEREQLATTSRDGSSSGLPTNSRPENHQSKTPEINIQATQEGVIVKVSFPTDVHPISKLIQAFKDTEITILESKLNATNDTVFHTFIIKSQKSEQLTKEKLIAAFSKESNSL 638
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01041 638 MobiDBLite consensus disorder prediction 534 559 - -
Vifa4g01041 638 Gene3D - 465 535 IPR036638 GO:0046983
Vifa4g01041 638 MobiDBLite consensus disorder prediction 379 398 - -
Vifa4g01041 638 MobiDBLite consensus disorder prediction 439 480 - -
Vifa4g01041 638 FunFam Transcription factor bHLH13 462 536 - -
Vifa4g01041 638 PANTHER MYC 40 630 IPR045084 GO:0003700|GO:0006355
Vifa4g01041 638 MobiDBLite consensus disorder prediction 407 480 - -
Vifa4g01041 638 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 469 518 IPR011598 GO:0046983
Vifa4g01041 638 MobiDBLite consensus disorder prediction 526 559 - -
Vifa4g01041 638 Pfam Helix-loop-helix DNA-binding domain 473 519 IPR011598 GO:0046983
Vifa4g01041 638 CDD bHLH_AtAIB_like 466 532 - -
Vifa4g01041 638 Coils Coil 508 535 - -
Vifa4g01041 638 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 53 245 IPR025610 -
Vifa4g01041 638 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 472 535 IPR036638 GO:0046983
Vifa4g01041 638 MobiDBLite consensus disorder prediction 407 431 - -
Vifa4g01041 638 SMART finulus 475 524 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01041 Vifa-Chr4 300026882 300028798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01041 9 634 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G01260 50.000 0.0 536
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa4g01041 bHLH-MYC_N 5.5e-55 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01041 - - gmx:100807078 800.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01041 4 300026882 300028798 Vifa4g01041 4 300026882 300028798 ECH
Vifa5g04030 5 1280261552 1280263282 Vifa4g01041 4 300026882 300028798 PCT