Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01031 ATGTCGATTAAGCGTACTACGAATATTGAAATGCCGAAATTAAAACGGTGTAAATTGGAGGAACCTGATGGTGTAGGTCATGGAGGATGTTCTGGGATTGAGAAGAAGCATAGGGTGAATGAGTTTTACTCTTTGGGTGACGCTGAGGATTTCAGCAGTGGTTCGGCTTCTTGGAATAGTGAAGTTTCGCATTCTGCATGTGATGCTGGTGGTGAGGTTGAGTTTAATTCAAGTTCTGTGTCTCGGCCCCCGTTATTGCGGTCCTCACGTGGCCGCCTTCAGACGCTTCCGTCGAGGTTTAATGATTCTGTGGTTCTTGATACATGGAAGAATTGTGGAATGAAAACGGAGGATGGAGATGGGGATGGAGATTCCAGCTTTGATGATGATAAGAGTTTTGTTGAGAATGATCAAGTTAAGTATAGTGATGGGAATTGTTTGAAGAATTCGGTGTTTTTTCCATTTGCTGAAATGAAGGTAGATGAAAGGGAGGGTGGTAATTTGTCTAGTGTGGGTAGAAAGACGATGAAGACTAATAGTAATGCTTCTGGTTCTGGTCTTAGTTTTGAGGATGTAGAGCAAAAGAATAATGGGAATGATGGAAAGAGGAGAGAGGTTTATAGGCCAGAGGATTTTGCTCTTGGTGATATTGTTTGGGCCAAATGTGGGAAGAGATATCCGGCTTGGCCAGCTGTGGTGATTGATCCCCTATTAGAGGCTCCTAAATCCGTCTTGGACTGTTGTGTTCCTTATGCAATATGTGTGATGTTTTTTGGTTATTCAAAAAATGGAACTCAAAGGGATTATGCATGGGTGAAACAGGGTATGATATTCCCCTTCTCTGAGTTCTTGAACAGATTTCAGGGGCAGACCCAGTTGTTCAAGTGCAAACCAAGTGACTTTCGCATGGCCGTGGAGGAGGCAAAGTTGACAAAAGATGGTATTCTGGAATCACATTTGCGAGCGGAGGAATTGTCTAATGTAGAAGCTTATCCTGATAGAGTTGAAGAGGTCATAATTTCAAATATTGATCAGGAATATTACTGCCAGGACCAGGATACTAGATGTTGTGACAGCTGTCGTTTGATGTTGCCATGCAAAACCATGAAGAAGGTTAAGGGTTCAAGTTATGCACCACAATTTCATTGCAAACACTGTTCTAAGTTACGAAAATCAAAACAATATTGTGGAATTTGCAAAAAGATTTGGCACCATTCTGATGGTGGGAATTGGGTATGTTGTGATGGTTGCAATGTATGGGTGCATGCTGAGTGTGACAAAATTTCTACCGAACATTTCAAGGATCTGGAAAATACCGATTACTATTGTCCAGATTGCAAGAAAAGTATCAATTGTAAACTACCAGAATCAACAGCATACGCGTCAAAAATCAAATCAGTGGAGTATAACCAAAATGGCGTGGTTCCTGAGAAGTTAATGGTGGTGTGCAATGGAATGGAAGGAATTTACTTCCCAAAGCTTCATTTAATTATGTGCAAGTGTGTCTCTTGTGATTCAAAGAAGCGGACACCCAGTGAATGGGAACGACATACTGGAAGCAGAGCCAAAAAATGGAAATACAGTGTGAAAGTGAAAAGTACAATGCTACCACTTGAAAAATGGATCACGGAGCACATTTCACAAGATGGAGTTCCCCAGGAATTAAATCAGCAGCAGGTGCTTGCTTTTTTGCAAGAGAAGTATGAGCCAGTTCGTGCAAAATGGACGACAGAAAGATGTGCTGTTTGTAGATGGGTTGAAGATTGGGAAGATAACAAATTTATCATCTGTAACAGGTGCCAAATAGCCGTACACCAAGAATGCTATGGTGCAAAGCATGTTCAGGATTTTACTTCTTGGGTTTGTAGAGTGTGTGAAACTCCTGACGTTGAAAGAGAATGTTGCCTCTGTCCAGTAAAAGGTGGTGCTCTGAAGTCAACTGATGTCGAGATGTTGTGGGTTCATGTAACATGCGCTTGGTTTCAACGTGAAGTTGTTTTCAAAAACCCTTTGGTCATGGAACCTGCCCTTGGAATTCTTAGAATTCCTCCTAATTCCTTTGTGAAGACTTGCGTAATTTGTAAACAAAGTCATGGTTCTTGTACAAGTTGTTGCAAGTGTGCGACTTATTTTCATGTAATGTGCGCATCAAGAGCTGGGTATACCATGGAATTGCATTCCAGGGTGAAGAATGGGATTCAAATAACAAAGAAGTTAATTTACTGTGCAGTTCATAGAGTCCCAAGTCCAGATTCTGTACTGGTTGCACATTCTTCCCTGGGGATTTTCTCGCCTAGAACTTCGATTCAAAATCAAAAGGGATACTTCCGGGGATCGAGATGCCGTGTACACCGAAGTTCTCCAATTAAGAGAGCCGATGTGCCAATAATTCACTTGCTGAGAGGACCCAGCCTTCATTCTATAAGTGAAATAACTCGATTGAACAATTATAAGGATGCTAAAGTATTTACTTCTTTCAAGGAACGTCTTCACCATCTGCAGAAAACTGAAAAACTTAGAATTTGCTTCGGAAAATCGGGTATTCATGGATGGGGTCTTTTTGCTCGAAGAGATATACAAGAAGGAGATATGGTTGTTGAGTATCGTGGTGAGCACGTAAGGCGTAGTATTGCCGATCTGAGGGAAGCAAAATATCGTTCAGAAGGCAAAGATTGCTATTTGTTCAAGATCAGTGAGGAAGTAGTCATTGATGCAACACACAGGGGAAATATAGCACGTTTAATAAACCACTCTTGCATGCCAAACTGCTATGCAAGGATTTTGAGTTTGGGTGATCAAGGGAGCCGGATTGTTCTTATTGCCAAAACCAATGTTTCTGCTGGTCAAGAACTAACGTATGATTACTTGTTCGATCCAGATGAGCAGGAAGAATTGAAAGTTCCCTGCCTTTGCAAAGCACTCAATTGTAGAAAATTTATGAACTAG 2946 0.4131 MSIKRTTNIEMPKLKRCKLEEPDGVGHGGCSGIEKKHRVNEFYSLGDAEDFSSGSASWNSEVSHSACDAGGEVEFNSSSVSRPPLLRSSRGRLQTLPSRFNDSVVLDTWKNCGMKTEDGDGDGDSSFDDDKSFVENDQVKYSDGNCLKNSVFFPFAEMKVDEREGGNLSSVGRKTMKTNSNASGSGLSFEDVEQKNNGNDGKRREVYRPEDFALGDIVWAKCGKRYPAWPAVVIDPLLEAPKSVLDCCVPYAICVMFFGYSKNGTQRDYAWVKQGMIFPFSEFLNRFQGQTQLFKCKPSDFRMAVEEAKLTKDGILESHLRAEELSNVEAYPDRVEEVIISNIDQEYYCQDQDTRCCDSCRLMLPCKTMKKVKGSSYAPQFHCKHCSKLRKSKQYCGICKKIWHHSDGGNWVCCDGCNVWVHAECDKISTEHFKDLENTDYYCPDCKKSINCKLPESTAYASKIKSVEYNQNGVVPEKLMVVCNGMEGIYFPKLHLIMCKCVSCDSKKRTPSEWERHTGSRAKKWKYSVKVKSTMLPLEKWITEHISQDGVPQELNQQQVLAFLQEKYEPVRAKWTTERCAVCRWVEDWEDNKFIICNRCQIAVHQECYGAKHVQDFTSWVCRVCETPDVERECCLCPVKGGALKSTDVEMLWVHVTCAWFQREVVFKNPLVMEPALGILRIPPNSFVKTCVICKQSHGSCTSCCKCATYFHVMCASRAGYTMELHSRVKNGIQITKKLIYCAVHRVPSPDSVLVAHSSLGIFSPRTSIQNQKGYFRGSRCRVHRSSPIKRADVPIIHLLRGPSLHSISEITRLNNYKDAKVFTSFKERLHHLQKTEKLRICFGKSGIHGWGLFARRDIQEGDMVVEYRGEHVRRSIADLREAKYRSEGKDCYLFKISEEVVIDATHRGNIARLINHSCMPNCYARILSLGDQGSRIVLIAKTNVSAGQELTYDYLFDPDEQEELKVPCLCKALNCRKFMN 981
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01031 981 ProSiteProfiles PWWP domain profile. 214 283 IPR000313 -
Vifa4g01031 981 ProSiteProfiles SET domain profile. 839 956 IPR001214 GO:0005515
Vifa4g01031 981 SUPERFAMILY FYVE/PHD zinc finger 393 454 IPR011011 -
Vifa4g01031 981 ProSiteProfiles Extended PHD (ePHD) domain profile. 631 746 IPR034732 -
Vifa4g01031 981 SUPERFAMILY Tudor/PWWP/MBT 205 337 - -
Vifa4g01031 981 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 574 628 IPR013083 -
Vifa4g01031 981 Gene3D - 202 316 - -
Vifa4g01031 981 FunFam Histone-lysine N-methyltransferase 813 981 - -
Vifa4g01031 981 ProSiteProfiles Zinc finger PHD-type profile. 577 628 IPR019787 -
Vifa4g01031 981 SUPERFAMILY SET domain 832 978 IPR046341 -
Vifa4g01031 981 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 629 747 IPR013083 -
Vifa4g01031 981 MobiDBLite consensus disorder prediction 171 194 - -
Vifa4g01031 981 Pfam PHD-finger 395 448 IPR019787 -
Vifa4g01031 981 Pfam SET domain 850 955 IPR001214 GO:0005515
Vifa4g01031 981 SUPERFAMILY FYVE/PHD zinc finger 578 642 IPR011011 -
Vifa4g01031 981 CDD PWWP_AtATX3-like 215 314 - -
Vifa4g01031 981 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 981 IPR025780 -
Vifa4g01031 981 ProSitePatterns Zinc finger PHD-type signature. 580 625 IPR019786 -
Vifa4g01031 981 Gene3D - 473 556 IPR010919 -
Vifa4g01031 981 SMART PHD_3 690 746 IPR001965 -
Vifa4g01031 981 SMART PHD_3 579 626 IPR001965 -
Vifa4g01031 981 SMART PHD_3 395 447 IPR001965 -
Vifa4g01031 981 SMART PostSET_3 965 981 IPR003616 -
Vifa4g01031 981 SMART PWWP_4 212 281 IPR000313 -
Vifa4g01031 981 FunFam Histone-lysine N-methyltransferase 629 748 - -
Vifa4g01031 981 SUPERFAMILY SAND domain-like 477 537 IPR010919 -
Vifa4g01031 981 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 388 452 IPR013083 -
Vifa4g01031 981 ProSiteProfiles Zinc finger PHD-type profile. 393 449 IPR019787 -
Vifa4g01031 981 Gene3D SET domain 818 981 IPR046341 -
Vifa4g01031 981 ProSiteProfiles Post-SET domain profile. 965 981 IPR003616 -
Vifa4g01031 981 MobiDBLite consensus disorder prediction 164 204 - -
Vifa4g01031 981 Pfam PWWP domain 215 309 IPR000313 -
Vifa4g01031 981 CDD PHD_ATX3_4_5_like 579 625 IPR042011 -
Vifa4g01031 981 Pfam PHD-zinc-finger like domain 633 745 - -
Vifa4g01031 981 SMART set_7 839 962 IPR001214 GO:0005515
Vifa4g01031 981 CDD SET_SETD1-like 828 977 - -
Vifa4g01031 981 CDD PHD_TCF19_like 396 446 - -
Vifa4g01031 981 PANTHER PHD FINGER PROTEINS 42 958 - -
Vifa4g01031 981 Pfam PHD-finger 592 626 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01031 Vifa-Chr4 297224859 297234491 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01031 352 420 EF-hand Containing Proteins AT5G28340 56.522 2.32e-19 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vifa4g01031 zf-HC5HC2H_2 2.4e-26 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01031 - - gmx:100793624 1467.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01031 4 297224859 297234491 Vifa4g01031 4 297224859 297234491 ECH