Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01028 ATGGCTATCTTGAAGTTCCTTTTTTACTTAATCTTTCCTGTCATACATGCCGCCTTTAATGATTGCCCATTTTCCTTATGCGGAAACTTTAGTTTACCTATTCGTTTCCCCTTTCAACTCGAAGGTGAGCAATCTCCTTATTGTGGCTATCCTGGTTTCAACTTAATTTGTTCAAATCATAGAAAAACAGTTATAGAACTTCCTTATTCTGGAGAATTCTATGTTCGCAACATAGACTATCTCACACAACAGATACGACTCTATGATCCTGATGATTGTCTTCCCAAACGTCTTCTAAACCTCAATTTTTCAAATTCTCCTTTCATTTCTACTTTTAGTCGCGACTACACCTTTTTAAGCTGCTCATCTCAGAATATAGGCTCGCAATTCATCCCCATTGATTGTCTTAGTAATTCCACGTATTTTGTATCGGCCATTCCTTCGGTGAACTTGGTCAATCCACTTCCTAGTTCTTGCTCTGTTATCAAAAGGCTTTTAGTTCCGGTTGCAAGACAAGAACGGTATGAAGAAAATAAAAGATATGATCTTAGTGCAGATCTTCAATTAACATGGGATAAACCTGACTGCAGTTATTGTGAATTGAATCAGCTAATGTGTGGATTTGAAAGCATTTATAACAGTAAAGTTGTCTGTATCTCTGATCACCAAGCAGGTACATCGGGACAAGGACTTAAAGTTTTCAGAATCATAGCACTATGTGTTACTGGACCAGCTCTAATCTTTGTTATATTAATGGCAAGTTGTGTATGCTACAATGACAGAATAGCAAACATTACCAGAAACGCAGCTTCTCGGTCTGCACCAGCTGCAATAGCACCACAGCCTGAAATCATAGTAACTACAGGTTTAGATGAAACCACTATTGAATCTTATGAGAAAGTAGTTCTTGGGGAGAGTCGACGTGTTCCTGGACCGAACGATGGATGTTGTTGGATATGCTTGTCTGAGTACAATAGTAAGGAGACTGTAAGATGCATCCCTGAATGCAAACATTGTTTCCATGCTGATTGCATTGATGAGTGGCTTCGTATTAATATTACGTGCCCTGTTTGTCGCAATTCTCCAGCTCCTTCTCCTCTAAATGTTGCTTCTAGAAATCTTTGA 1125 0.3876 MAILKFLFYLIFPVIHAAFNDCPFSLCGNFSLPIRFPFQLEGEQSPYCGYPGFNLICSNHRKTVIELPYSGEFYVRNIDYLTQQIRLYDPDDCLPKRLLNLNFSNSPFISTFSRDYTFLSCSSQNIGSQFIPIDCLSNSTYFVSAIPSVNLVNPLPSSCSVIKRLLVPVARQERYEENKRYDLSADLQLTWDKPDCSYCELNQLMCGFESIYNSKVVCISDHQAGTSGQGLKVFRIIALCVTGPALIFVILMASCVCYNDRIANITRNAASRSAPAAIAPQPEIIVTTGLDETTIESYEKVVLGESRRVPGPNDGCCWICLSEYNSKETVRCIPECKHCFHADCIDEWLRINITCPVCRNSPAPSPLNVASRNL 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01028 374 SMART ring_2 317 358 IPR001841 -
Vifa4g01028 374 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 364 IPR013083 -
Vifa4g01028 374 ProSiteProfiles Zinc finger RING-type profile. 317 359 IPR001841 -
Vifa4g01028 374 SUPERFAMILY RING/U-box 310 362 - -
Vifa4g01028 374 CDD RING-H2_EL5-like 316 359 - -
Vifa4g01028 374 Pfam Ring finger domain 317 359 IPR001841 -
Vifa4g01028 374 Pfam Wall-associated receptor kinase galacturonan-binding 22 89 IPR025287 GO:0030247
Vifa4g01028 374 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 362 IPR046948 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01028 Vifa-Chr4 297107001 297108684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01028 27 364 C3H Transcription Factor Family AT2G25410 44.152 3.09e-91 277
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01028 - - gmx:100798415 538.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01028 4 297107001 297108684 Vifa4g01028 4 297107001 297108684 ECH
Vifa5g04011 5 1277181047 1277182314 Vifa4g01028 4 297107001 297108684 PCT