Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01026 ATGATGAGTCCAAAGGAAAAGAAATTTGTGAGATTTGAAGATTGGAAATCAGAATCATCATCTTTTAATATTTCACAATATGATTCTTCAATTGATGGATTTGAAAAAAGAAAATCTAAACCAAGTTTTAGTCCTGCAAAAAACAATGAACCATTGCAAAAACCAGCTTCTAGGTGGAGTGTTCTTGATCCACAAGGTCCACTACTTCAAAAATGGAACAAGATCTTTGTAATAACATGTGTCATGGCAGTGTCGATGGATCCACTGTTCTTTTACATCCCTGTGATTGATGACGAGAAAAAGTGCCTTGATTTGAGTGGAACTTTGAAGATTACTGCGAGTGTTCTTCGCACGTTTTTCGATCTTTTCTACATTCTTCGTATAGTGTTTCAGTTTCGAACCGGGTTTATTGCTCCTTCTTCGCGCGTGTTCGGAAGGGGTGAGCACGTTGATGATCTTTGGGCTATAGCAGTTAGATACTTAAGTTCTCATTTCATCATTGATATTCTATCAATTCTTCCACTTCCTCAGATGGTGATTTTGGCTATAATTCCAATTCAACAATGCTCAGTTCCATATATAGCAAAGGATTGGTTGAAGTATACAATAATAACACAGTATGCACCGAGACTTTTGCGAATCTATCCGTTGTTCAAAGAAGTAACAAGCACTTCTGGTATATTGACTGAGACGGCATGGGCTGGAGCTGCTTATAATCTTTTTCTTTATATGCTAGCAAGTCATGTGGTTGGAGCTTTTTGGTATTTGTTTTCAATAGAATCAGAGTTGCGGTGTTGGCGCAAACGATTGAAGAATACTGGACTTTTTGATGATTCCTATTTGAGCTGTGGATGGGTTAATTCGACTGTTTTTTCGTTTCTCAGCAACTCGACTACTTGTCCTTTCAAAGAACCTGATGATATCGTTGATCCAACAGTTTTTGATTTTGGAATATTTATTGATGGTCTAAAGTCTCGTGTCGTCGGTTCGACTACAGACTTTCATCATAAATTCTTCTACTGTTTTTGGTGGGGTTTGCGCAATTTGAGTTCTGTTGGGCAGAACCTGAAGACAAGCACTTATATTGGGGAGATAATCTTTGCGATCTTCATCGCCGTCTTTGGATTGGTTCTATTCGCATTACTTATTGGAAACATGCAGAAATATCTACAATCTACAACTGTTAGAGTTGAAGAGATGAGAATCAAAAGGAGGGATGCAGAACAATGGATGTGCCACCGTATGCTACCGGAGTACATGAAGCAAAGAATTCGACGGTATGAACAATACAAATGGCAAGAAAATCGAGGTGTCGAAGAGGAGACGTTGATTCGCAACCTCCCTAAAGATCTCAGAAGAGACATAAAGAGACATCTTTGCTTAGATTTACTTAAAAAAGTGCCTATTTTCGGCAACATGGATAAACAGTTGCTGGATGCAATGTGTGATAAACTCAAACCAGTCCTTTATACCGAGAAAAGTTATGTGGTTCGCGAAGGTGATCCGGTGGACGAAATGCTCTTCATCATGCGCGGAAAACTTAAGACTGCAACAACAAATGGTGGAAGAACTGGTTTCTTTAACTCGTCGGAGCTTAAGTCTGGTGATTTTTGTGGAGAGGAGCTTCTAACATGGGCATTGGATCCTAACACTTCCTCTAACTTACCTATTTCAACTAGTACTGTGGAAACTATTTCAGAAGTTGAAGCTTTTGCTCTCATGCATGATGACTTGAAGATTGTTGCTTCTCAATTTCGCCGTCTTATCAACAGAAAACAACTTCAACACACTTTTAGGTTCTATTCATTGCAATGGAGGACATGGGGAGCGCGGTTCATACAAGTAATATGGCGTCGATACAGAGAAAAAAGGGCTCATAAAGCGTTACGTGAAGCAGATGTAAGACTACAAAATGCTTCTGAAAATGAGGAAGAGTGTTCACCAAGCTTTGTTTCCACCATGTATGTACAAAGGTTTGCATCTAATGCATTAAGGCACTTAAGAAGTGACAAAAGAGTGATGCTGACGCAGACACAGACACCGACAAAGAGATTGCTACCACTCTTGCCTAAGAAACCAGCTGAGCCAAATTTCATTACTCAAAAGAACTAA 2112 0.393 MMSPKEKKFVRFEDWKSESSSFNISQYDSSIDGFEKRKSKPSFSPAKNNEPLQKPASRWSVLDPQGPLLQKWNKIFVITCVMAVSMDPLFFYIPVIDDEKKCLDLSGTLKITASVLRTFFDLFYILRIVFQFRTGFIAPSSRVFGRGEHVDDLWAIAVRYLSSHFIIDILSILPLPQMVILAIIPIQQCSVPYIAKDWLKYTIITQYAPRLLRIYPLFKEVTSTSGILTETAWAGAAYNLFLYMLASHVVGAFWYLFSIESELRCWRKRLKNTGLFDDSYLSCGWVNSTVFSFLSNSTTCPFKEPDDIVDPTVFDFGIFIDGLKSRVVGSTTDFHHKFFYCFWWGLRNLSSVGQNLKTSTYIGEIIFAIFIAVFGLVLFALLIGNMQKYLQSTTVRVEEMRIKRRDAEQWMCHRMLPEYMKQRIRRYEQYKWQENRGVEEETLIRNLPKDLRRDIKRHLCLDLLKKVPIFGNMDKQLLDAMCDKLKPVLYTEKSYVVREGDPVDEMLFIMRGKLKTATTNGGRTGFFNSSELKSGDFCGEELLTWALDPNTSSNLPISTSTVETISEVEAFALMHDDLKIVASQFRRLINRKQLQHTFRFYSLQWRTWGARFIQVIWRRYREKRAHKALREADVRLQNASENEEECSPSFVSTMYVQRFASNALRHLRSDKRVMLTQTQTPTKRLLPLLPKKPAEPNFITQKN 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01026 703 ProSiteProfiles cAMP/cGMP binding motif profile. 469 553 IPR000595 -
Vifa4g01026 703 FunFam Cyclic nucleotide-gated ion channel 1 467 585 - -
Vifa4g01026 703 SMART cnmp_10 469 600 IPR000595 -
Vifa4g01026 703 MobiDBLite consensus disorder prediction 1 15 - -
Vifa4g01026 703 Gene3D - 74 393 - -
Vifa4g01026 703 Pfam Cyclic nucleotide-binding domain 489 579 IPR000595 -
Vifa4g01026 703 CDD CAP_ED 469 601 IPR000595 -
Vifa4g01026 703 MobiDBLite consensus disorder prediction 1 58 - -
Vifa4g01026 703 FunFam Cyclic nucleotide-gated ion channel 1 396 460 - -
Vifa4g01026 703 Gene3D Helix hairpin bin 396 460 - -
Vifa4g01026 703 SUPERFAMILY cAMP-binding domain-like 398 587 IPR018490 -
Vifa4g01026 703 Gene3D Jelly Rolls 467 587 IPR014710 -
Vifa4g01026 703 MobiDBLite consensus disorder prediction 16 30 - -
Vifa4g01026 703 Pfam Ion transport protein 72 397 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Vifa4g01026 703 SUPERFAMILY Voltage-gated potassium channels 63 391 - -
Vifa4g01026 703 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 47 679 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01026 Vifa-Chr4 296846244 296849299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01026 10 698 Ion Channels AT4G01010 61.181 0.0 865
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01026 K05391 - gmx:100795201 1048.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g04009 5 1277001386 1277004402 Vifa4g01026 4 296846244 296849299 PCT