Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01024 ATGCCCACAAAAATATTCTTATCACAAATGCGTCTTCTTCACTCTCCATTTCTCTCTCAATCTCTCATCAGATTTTCTCACCTTCCACTCCGCAACGCCGCGTTTCGTCCCCGCACTCTCTCCGTCCGTCCGCATAGACTCAGGGCTTCCAAAAGCCTCGTCGATGACGAGGCCGACCTTAGTAATTGGGTCGACGATTTGCGAACCGGTCGCGGTACAGCCGATGCCATAAAACCGGGCTCCGCTGGGGGTAAAGCACGGAAGAGTAGTGTTGTTAGTAGGGGTTCTGGTTTGGGAGAAAGAAGAGGTGGTGATTTTAATTCCAAGAGGAGGTTTCCGTTGAGGAGTGATAGTAGTGATGTTGAGGATGAGGTTGTGGCTCGAGGGAAGTTTAAAGGTGGTGGTGGTTCTGGGAGTATTCGTAGATTTATGAGTGAAGATGAAACTGAAGTAGAAGAAAGTGATGAGGATATTGTTGACAAGAGTACAAGTGTTTTGTTTGGTAAAAAAGCAAGTGGCCTGTCATCATCAACAACAACAACAACAACTCCTAGACCTGCTTCACCTGGCGGAACTGATTCTTATTTAAGTGATTCCAGATTCGATCAGTGTTCAGTCTCTCCACTGTCCTTAAAAGGAGTCAAGGATGCTGGATATGAGAAAATGACTGTCGTGCAGGAGGCAACCCTTCCAGTAATTCTTAAAGGTAAGGATGTCCTAGCCAAGGCTAAAACAGGCACAGGAAAAACAGTAGCCTTTTTGCTTCCATCAATTGAAATTGTTGTGAAGTCTCCACCAAGTGACCGTGATCAAAGGCGACCACCCATTTTTGTTCTTATCATATGTCCTACCCGAGAACTTGCATGTCAAGCTGCTGCCGAAGCCACTAAACTGCTCAAGTATCATCCTACCTTAGGTGTTCAAGTTGTGATTGGAGGAACAAGACTTGCTTTAGAACAGAAACGCATGCAAGCAAATCCTTGCCAGATCCTTGTTGCTACACCTGGAAGGCTTAGAGATCATGTTGAAAATACTGCTGGTTTTGCATCCAGGCTTATGGGGGTGAAGGCCTTGGTGCTTGATGAAGCTGATCATTTACTAGACATGGGATTTCGCAAAGATATTGAGAAAATAATTGCTGCAATCCCTAAACAACGACAGACACTTATGTTTTCTGCAACAATTCCAGACGAGGTGCGCCAAGTCTGCCATATTGCCATGAAAAGGGATTTTGAATATATTAATACAGTTCAGGAGGGTAGCGAGGATACACATTCACAGGTCCGCCAAATGCATTTAGTTGAACCATTAGAGAAGCATTTCCATTTACTCTATGCTATTCTGAAGGAGCACATTGCAGATGATGTTGAGTATAAGGTTCTTGTTTTCTGCACAACTGCTATGGTCACAAGACTTGTTGCTGATCTCCTTGGGGAGTTGAACTTGAATGTGAGAGAAATCCATTCAAGAAAGCCTCAGAGTTATAGAACCAGGGTTTCTGATGAATTCCGGAAGTCAAAGGGTCTCATCTTGGTTACTTCGGATGTATCTGCCCGTGGAGTTGATTATCCGGATGTTACTCTCGTTGTACAGGTTGGTTTGCCGGCTGATAGAGAACAATATATACATCGACTAGGTAGAACGGGGCGAAGAGGAAAAGAAGGTCAGGGCATACTGCTACTAGCTCCTTGGGAAGAGTTCTTTTTAGCTACCGCAAAAGATTTACCTATTGAGAAAGCTCCGGTCCCTTCAGTTGATTCCGACACTAAGAAAAAGGTGGAAAGGGCTCTATCAAATGTGGAGATGAAGAATAAAGAAGCAGCATATCAGGCATGGCTTGGTTACTACAACTCTAACAAGAAAGTGGGGAAAGATAAGTATAGCCCTCCAGCTATTTCTAAGCTTATCCTTGGCAAGATGGGTCTTAAAAATATCCCTGGTTTACGTTCCAAATAG 1956 0.4417 MPTKIFLSQMRLLHSPFLSQSLIRFSHLPLRNAAFRPRTLSVRPHRLRASKSLVDDEADLSNWVDDLRTGRGTADAIKPGSAGGKARKSSVVSRGSGLGERRGGDFNSKRRFPLRSDSSDVEDEVVARGKFKGGGGSGSIRRFMSEDETEVEESDEDIVDKSTSVLFGKKASGLSSSTTTTTTPRPASPGGTDSYLSDSRFDQCSVSPLSLKGVKDAGYEKMTVVQEATLPVILKGKDVLAKAKTGTGKTVAFLLPSIEIVVKSPPSDRDQRRPPIFVLIICPTRELACQAAAEATKLLKYHPTLGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHVENTAGFASRLMGVKALVLDEADHLLDMGFRKDIEKIIAAIPKQRQTLMFSATIPDEVRQVCHIAMKRDFEYINTVQEGSEDTHSQVRQMHLVEPLEKHFHLLYAILKEHIADDVEYKVLVFCTTAMVTRLVADLLGELNLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVVQVGLPADREQYIHRLGRTGRRGKEGQGILLLAPWEEFFLATAKDLPIEKAPVPSVDSDTKKKVERALSNVEMKNKEAAYQAWLGYYNSNKKVGKDKYSPPAISKLILGKMGLKNIPGLRSK 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01024 651 Pfam Helicase conserved C-terminal domain 445 552 IPR001650 -
Vifa4g01024 651 SMART helicmild6 471 552 IPR001650 -
Vifa4g01024 651 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 276 567 IPR027417 -
Vifa4g01024 651 PANTHER RNA HELICASE 160 596 - -
Vifa4g01024 651 CDD DEADc_MSS116 206 415 - -
Vifa4g01024 651 Gene3D - 423 640 IPR027417 -
Vifa4g01024 651 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 199 227 IPR014014 GO:0003724
Vifa4g01024 651 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 447 598 IPR001650 -
Vifa4g01024 651 MobiDBLite consensus disorder prediction 103 129 - -
Vifa4g01024 651 Gene3D - 172 414 IPR027417 -
Vifa4g01024 651 SMART ultradead3 218 431 IPR014001 -
Vifa4g01024 651 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 230 413 IPR014001 -
Vifa4g01024 651 Pfam DEAD/DEAH box helicase 224 401 IPR011545 GO:0003676|GO:0005524
Vifa4g01024 651 CDD SF2_C_DEAD 428 561 - -
Vifa4g01024 651 MobiDBLite consensus disorder prediction 77 158 - -
Vifa4g01024 651 MobiDBLite consensus disorder prediction 172 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01024 Vifa-Chr4 295400275 295404515 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01024 192 580 Eukaryotic Initiation Factors Gene Family AT3G19760 28.392 2.83e-46 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01024 - - gmx:100795739 897.886