Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01022 ATGAACCCTGCTGCCCAGAACGCGGCGGCGGACAAAAACTCCGGCTCCCGCTCACGGAAGAGGAAAAACCGTGACTTGAAAAATGGTAAACCTAATGGAAGTTCAAAAAAAAGGTTTCAAACTTCCAACAATGAGGTCGTAGAAGAAGTAAATTTGAACAAAGGCGGTGATGTTAACGGTGGTTCTGGAAGTATTGTCGTAACTGATTCTTATTTAACTGATTCCAGATTCGATAAATGTTCGGTTTCACCCTTGTCGTTAAAAGGAATCAAGGATGCTGGATATGAGAAAATGACTCTTGTTCAAGAGGCAACACTTCCAGTTATTCTAGAAGGTAAGGATGTCTTGGCTAAAGCTAAAACAGGCACGGGAAAAACAGTAGCCTTTTTGCTTCCATCGATTGAACTTGTTGTGAAGTCTCCACCAATTGATCGTGGTCAAAAGCGGACACCGATTCTTATTCTTGTCATCTGCCCAACTCGAGAGCTTGCTTGTCAAGCTGCTGCAGAAGCAACTAAACTGCTTAAGTATCATCCCACCATTGGTGCTCAAGTTGTGATTGGAGGAACAAATCTTAGTTCAGAACAGAAACATATGCAATCAAATCCTTGCCAGATCCTTGTTGCTACACCTGGAAGGCTTAGAGATCACATTGATAATACTGCCGGTTTTGCATCTAGGCTAATGGGGGTGAAGGCCTTGGTGCTCGATGAAGCTGATCATTTACTAGACATGGGATTTCGCAAAGATATTGAGAAAATAATTGCTGCAGTCCCTAAACAACGACAAACACTTATGTTTTCTGCAACTGTTCCGGAGTCGGTGCATCAAGTCTGTAACATTGCATTGAGAAAGGATTTTGAATTTATTTCTACAGTTCAGGAGGGTACTGAGGAGACACATTCAAAGGTTAACCAGATGTATTTAGTTGCCCCATTAGACAAGCATTTCTCTTTACTCTATGCTATTCTGAAGGAGCACATTGCTGCTGATGTTGACTATAAGGTTCTTGTTTTCTGCACAACTGCCATGGTCACAAGACTTGTTTCTGATCTTCTTGGGAGGTTGAACTTGAATGTCAGAGAAATCCATTCAAGGAAGCCTCAGAGTTATAGAACCAGAATTTCTGATGAATTCCGCAGGTCAAAGGGTATCATCCTTGTTACTTCAGATGTATCCGCACGTGGAGTTGATTATCCAGATGTTACTCTTGTTGTACAGGTTGGCCTACCGACCGATAAACAACAATATATACATCGACTAGGTAGAACGGGTCGAAAAGGAAAAGAAGGACAGGGCATACTGCTACTAGCTCCTTGGGAAGAGTTCTTTTTAGATTCCACAAAAGATTTGCCTATTGGGAAAGCTCCGGTACCTTCAGTCGATCCTGACACTAAGAAAAAGGTGGAAAGGGCTATGACCAATGTGGAGATGGAGAATAAAGAAAAAGCATATCAAGCATGGCTCGGTTACTACAATTCTAATAAGAAAGTGGGGAAAGATAAGAAAAAGTTAGTGGAGCTTGCAAATGAATTCAGTAAATGCATGGGGCTTGATACCCCTCCAGCTATCTCTAAACTTATCCTTCGCAAGATGGGTCTTGGAAATGTCCCTGGTTTACGTTCCAAATAG 1632 0.4197 MNPAAQNAAADKNSGSRSRKRKNRDLKNGKPNGSSKKRFQTSNNEVVEEVNLNKGGDVNGGSGSIVVTDSYLTDSRFDKCSVSPLSLKGIKDAGYEKMTLVQEATLPVILEGKDVLAKAKTGTGKTVAFLLPSIELVVKSPPIDRGQKRTPILILVICPTRELACQAAAEATKLLKYHPTIGAQVVIGGTNLSSEQKHMQSNPCQILVATPGRLRDHIDNTAGFASRLMGVKALVLDEADHLLDMGFRKDIEKIIAAVPKQRQTLMFSATVPESVHQVCNIALRKDFEFISTVQEGTEETHSKVNQMYLVAPLDKHFSLLYAILKEHIAADVDYKVLVFCTTAMVTRLVSDLLGRLNLNVREIHSRKPQSYRTRISDEFRRSKGIILVTSDVSARGVDYPDVTLVVQVGLPTDKQQYIHRLGRTGRKGKEGQGILLLAPWEEFFLDSTKDLPIGKAPVPSVDPDTKKKVERAMTNVEMENKEKAYQAWLGYYNSNKKVGKDKKKLVELANEFSKCMGLDTPPAISKLILRKMGLGNVPGLRSK 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01022 543 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 75 103 IPR014014 GO:0003724
Vifa4g01022 543 Gene3D - 18 289 IPR027417 -
Vifa4g01022 543 CDD SF2_C_DEAD 304 437 - -
Vifa4g01022 543 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 323 470 IPR001650 -
Vifa4g01022 543 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 152 443 IPR027417 -
Vifa4g01022 543 MobiDBLite consensus disorder prediction 1 44 - -
Vifa4g01022 543 PANTHER RNA HELICASE 42 476 - -
Vifa4g01022 543 SMART ultradead3 94 307 IPR014001 -
Vifa4g01022 543 CDD DEADc_MSS116 82 291 - -
Vifa4g01022 543 Pfam DEAD/DEAH box helicase 100 277 IPR011545 GO:0003676|GO:0005524
Vifa4g01022 543 SMART helicmild6 347 428 IPR001650 -
Vifa4g01022 543 Pfam Helicase conserved C-terminal domain 320 428 IPR001650 -
Vifa4g01022 543 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 106 289 IPR014001 -
Vifa4g01022 543 Gene3D - 298 528 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01022 Vifa-Chr4 294828050 294837075 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01022 68 456 Eukaryotic Initiation Factors Gene Family AT3G19760 28.392 1.31e-45 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01022 - - mof:131166847 801.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01022 4 294828050 294837075 Vifa4g01022 4 294828050 294837075 ECH