Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g01013 ATGGAAGAGAACATTAAGTGTGAACTAAGACAAGCAATTACCATGGTGAAAGATAATGTGGGAAATTTGAAGACAAAAAATGTCAACATGATTGATTCTCATTGTCCAAATGGAAGTCCTAAAAGTGAGGTTCAAGATTCTGAGTTCAAGCAAAAACATGTTTCCAAGAAAAGAAAAACCATGCCTAAGTGGACAGAACAAGTGAAGGTGCATTTAGGAACAGCTTCTGAGGGGTCTATGGAGGATGGTTATAGCTGGAGAAAGTATGGACAAAAGGATATTCTTGGAGCTAAGTTTCCAAGAGGATATTACAGATGCACACATAGAAATGCACAAGGTTGTCTAGCTACAAAACAAGTGCAAAAATCAGAATATGATCCAATGATATATGAGATAACCTACAAAGGAAGACACACATGCATCCAATCTAGTCATTTGAACAAACCACATTCATCAAAAAAGATGAAATTTGGACAAAACAATTCACAATTACCCAATCAAAAAATTCAACCTCAAGAAGAAAAAACTCAACCTACAACCCAAGAGAAAATTTTCACTTTTGACAACAAAGAGGATGTGTTTCCATCATTCAATTTTTCTTCTCCAACAATAGGATCTGAAAATGAAGATAACAAGATCTTTTTAGAGACATTGATTGAAAACAATTTCATGGAAAATGAAGACAAAAACAATATATTCTCCGAATCAAACGTTTTGACTTTGTCACTATTGGATTTGGACACTATTGGGCTAGGCCCAAGTGAGTCTGACATGAGTGATATGATTTCAGGCCTAAATTCATTTGTCGATTCGTCGATAGATTTTGATATCTTTGATGATATAAACTTTGACATGGATTTTTCTAGCAACATTCAAGAACTTTACTATTGA 891 0.3434 MEENIKCELRQAITMVKDNVGNLKTKNVNMIDSHCPNGSPKSEVQDSEFKQKHVSKKRKTMPKWTEQVKVHLGTASEGSMEDGYSWRKYGQKDILGAKFPRGYYRCTHRNAQGCLATKQVQKSEYDPMIYEITYKGRHTCIQSSHLNKPHSSKKMKFGQNNSQLPNQKIQPQEEKTQPTTQEKIFTFDNKEDVFPSFNFSSPTIGSENEDNKIFLETLIENNFMENEDKNNIFSESNVLTLSLLDLDTIGLGPSESDMSDMISGLNSFVDSSIDFDIFDDINFDMDFSSNIQELYY 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g01013 296 Gene3D WRKY domain 64 135 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa4g01013 296 SUPERFAMILY WRKY DNA-binding domain 78 140 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa4g01013 296 ProSiteProfiles WRKY domain profile. 75 138 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa4g01013 296 MobiDBLite consensus disorder prediction 34 62 - -
Vifa4g01013 296 FunFam WRKY transcription factor 53 66 143 - -
Vifa4g01013 296 SMART WRKY_cls 80 142 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa4g01013 296 MobiDBLite consensus disorder prediction 143 179 - -
Vifa4g01013 296 Pfam WRKY DNA -binding domain 81 140 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa4g01013 296 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 35 268 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g01013 Vifa-Chr4 291956347 291957947 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g01013 38 146 WRKY Transcription Factor Family AT4G11070 59.292 1.15e-39 138
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa4g01013 WRKY 7.1e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g01013 - - psat:127076062 451.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g01013 4 291956347 291957947 Vifa4g01013 4 291956347 291957947 ECH