Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00999 ATGACTGCTAACAATGGAAGAGGAAGTGATGAAAATAAGAGAAAAAGCAATGTGATTATTGGTAATGAGAATAATGGTTTGACTAGAAATTTTGCTTCTTTAGTTGGATCTGAACCTCCTAGTACTAGTTTTTGTTCCACCACAGATCCTAAACACATTGTTGAAAAATTGCATGTTAGGAAGTATCATAATAGCTTTAGTAGAGAAGTTGCATTGAAAAAAGTTGAAGAACAGATACCTCTTAGGTTAAGCAAAAGGCAAAAGGGAAGTGATTCTAGGATAAACTTAAATCATGAACCGCGTAAAGGTTTCGGTAATTTGAGTAATAGTAGTAAAATGCAAAGTGCTTCATCTATGTCTAGTTATCCTCAAAAGGGAAAGGGAGTTATTCAGAAAGATTTGGATAATGTTATGTCTGGCGGCGGAATCGTGTTAAGAGTGTGGATGAAGTCTGAGAGTCATAGAATGAAGAAAACAGAAAGGTTGTGTATATTTAAACAGATCTTGGAATTGGTTGATTTTGCACATTCTCAAGGGTTTGTCTTGCAAGAGATAAAACCGTCTTGTTTCACATTATCGCCTTCGAATAAGATTAAGTACATTGGTTTGTATAGTCAACAAGTGTTTGATGACAGACAATCGTGTTTCACCGTGTTTAAGTCGTGTCTTAAGGCCATCGTGACTTGTAAAGAGACGGAATCTCTTAAGCAGCAGCAGCATTTTAATGGAAGTAGGACTAAATCGGAGAATCAAACTGAATGCGACACGAGCATGTTCATTGAATCAAGGGTTAAAGAGAGGATGTGTCCAGATGGTTCGAGTTATCAACACGGTTTTGCAGAAGATAAACAGTTAGAAGAGAAGTGGTACACTAGTCCAGAATCGGTCGACGATGGAAGTTCTACTTTTTCATCAAATGTTTATAGCCTTGGAGTTATTCTTTTTGAGTTGCTGTGCAATATTGAGTCATTGGAAGCACATTCATCTGTGATGTTTGATATGCGTCATCGAATCTTACCGCCGAAATTTCTATCACAAAATGCAAAGGAAGCTGGCTTTTGTCTATGGCTTCTGCACCCTGAGCCTTCTTCTCGTCCGAATTCCAGGATGATTTTAGAATCTGAATTTATAAGCGAATTAGAGGAATCGAGTTCTGGCGATAATGTTATAGTATCTGAAGGCGATGTAGCTGACACTGAGGAACTGCTGAATTTTCTAGTTTCGGTTGAAGAGGAAAAGAAAAAACAAGAAGCCAAATTGGCAGAAGAGTTAAATTTTTTGAATGAAGATATTAAGGAGGTGGAAAGAAATCATTCATATGAGACTGATTCAGTATTTCCTTTGGCACAATTGAACTATCGAAACTTTCAAACTTCTTCCACAGATATCGGTCGATCTATTCAAAGGTCATTCCCTGACAAAGCAAGATTTATGAGTACTATAAGTCAGCTAGAGAACAGTTACTTTTCCATGAGATTCCAAGGCCTGCTCAAGGACGCTGCAGCGGTTAAAACCAGCGATAAAGCCGTGATGGAAAGTAGATGGCGATTGCCGCATTTAGAGAATGTTATTAGTAATGATCCGAAGAGAATTCAAGGCTCTATCGGTTGTCTAGGACCTTTCTTTGATGGTTTATGCAAATTCGCTCGTTACAGCAAGTTTGAAGAGCGCGGAACATTGAGAAATAGAGATTTGCTTAGTTCTGCCAATGTGATATGTGCCTTGAGTTTTGACCGCGACGAGGACTACATAGCAGCCGGTGGAATTTCGAAGAAAATAAAGATATTTGACCTCAATGCTACTTCGAGTGATTCTATAGACATTCAGTACCCCGTTGTCGAGATGTCAAACAAATCGAAGCTTAGTTGCGTGTGCTGGAACAGTTATATCAAAAACCATCTGGCTTCTACTGATTATGATGGTGTGGTTCAGATGTGGGATGCAGGCACTGGGCAGGCACTGTCTCAATACATGGAGCACCAGAAGAGAACTTGGTCTGTTCACTTTTCGGTGTCTGACCCGAAAATGTTTGCTAGTGGAAGCGACGATTGCTCGGTCAAACTGTGGAATATCAGCGAGAGAAATTCTATAGGAACCATATTGAGTCCTGCAAATGTATGTTGTGTTCAGTTCTCTGAGTACTCTTCAAATCTTTTGTTTTTCGGATCGGCTGATTACAAGGTCTACGGTTATGATCTTCGCCACACTAAAATCCCTTGGTGTACATTATCTTGTCATGGAAAAGCTGTTAGCTATGTAAAATTTATAGATGCACAAACAGTTGTGTCTGCTTCCACTGATAACACTTTGAAGCTATGGGACCTGAAGAAAACTAGCTCGGATGAGTCGTCATCTAATTCTTGTGACTTAACCTTTCGAGGTCATAGTAACGAAAAGAATTTCGTTGGTTTATCGGTTTTGGATGGATACATTGCATGTGGTTCAGAATCTAATGAGGTATACTGTTATCACAAATCTCTGCCAGTGCCAATTGCTTCTCACAAATTCCAGTCAATCGATCCTATTTCCGGCCATTCAAATAGTTGTGACAACAACGGACAATTTGTTTCGAGTGTCTGCTGGAGAAAGAAGTCTAACATGCTTGTCGCAGCCAACTCAGTTGGAATTGTGAAACTACTGCAGATGGTGTGA 2652 0.3944 MTANNGRGSDENKRKSNVIIGNENNGLTRNFASLVGSEPPSTSFCSTTDPKHIVEKLHVRKYHNSFSREVALKKVEEQIPLRLSKRQKGSDSRINLNHEPRKGFGNLSNSSKMQSASSMSSYPQKGKGVIQKDLDNVMSGGGIVLRVWMKSESHRMKKTERLCIFKQILELVDFAHSQGFVLQEIKPSCFTLSPSNKIKYIGLYSQQVFDDRQSCFTVFKSCLKAIVTCKETESLKQQQHFNGSRTKSENQTECDTSMFIESRVKERMCPDGSSYQHGFAEDKQLEEKWYTSPESVDDGSSTFSSNVYSLGVILFELLCNIESLEAHSSVMFDMRHRILPPKFLSQNAKEAGFCLWLLHPEPSSRPNSRMILESEFISELEESSSGDNVIVSEGDVADTEELLNFLVSVEEEKKKQEAKLAEELNFLNEDIKEVERNHSYETDSVFPLAQLNYRNFQTSSTDIGRSIQRSFPDKARFMSTISQLENSYFSMRFQGLLKDAAAVKTSDKAVMESRWRLPHLENVISNDPKRIQGSIGCLGPFFDGLCKFARYSKFEERGTLRNRDLLSSANVICALSFDRDEDYIAAGGISKKIKIFDLNATSSDSIDIQYPVVEMSNKSKLSCVCWNSYIKNHLASTDYDGVVQMWDAGTGQALSQYMEHQKRTWSVHFSVSDPKMFASGSDDCSVKLWNISERNSIGTILSPANVCCVQFSEYSSNLLFFGSADYKVYGYDLRHTKIPWCTLSCHGKAVSYVKFIDAQTVVSASTDNTLKLWDLKKTSSDESSSNSCDLTFRGHSNEKNFVGLSVLDGYIACGSESNEVYCYHKSLPVPIASHKFQSIDPISGHSNSCDNNGQFVSSVCWRKKSNMLVAANSVGIVKLLQMV 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00999 883 ProSitePatterns Trp-Asp (WD) repeats signature. 761 775 IPR019775 -
Vifa4g00999 883 ProSiteProfiles Trp-Asp (WD) repeats profile. 657 699 IPR001680 GO:0005515
Vifa4g00999 883 PANTHER PROTEIN SPA1-RELATED 2 90 883 IPR044630 GO:0009640
Vifa4g00999 883 Coils Coil 410 437 - -
Vifa4g00999 883 Gene3D Transferase(Phosphotransferase) domain 1 144 388 - -
Vifa4g00999 883 MobiDBLite consensus disorder prediction 83 98 - -
Vifa4g00999 883 SUPERFAMILY Protein kinase-like (PK-like) 148 380 IPR011009 -
Vifa4g00999 883 MobiDBLite consensus disorder prediction 102 123 - -
Vifa4g00999 883 PRINTS G protein beta WD-40 repeat signature 634 648 IPR020472 -
Vifa4g00999 883 PRINTS G protein beta WD-40 repeat signature 677 691 IPR020472 -
Vifa4g00999 883 PRINTS G protein beta WD-40 repeat signature 761 775 IPR020472 -
Vifa4g00999 883 ProSiteProfiles Trp-Asp (WD) repeats profile. 743 783 IPR001680 GO:0005515
Vifa4g00999 883 SMART WD40_4 650 690 IPR001680 GO:0005515
Vifa4g00999 883 SMART WD40_4 785 824 IPR001680 GO:0005515
Vifa4g00999 883 SMART WD40_4 608 647 IPR001680 GO:0005515
Vifa4g00999 883 SMART WD40_4 736 774 IPR001680 GO:0005515
Vifa4g00999 883 SMART WD40_4 693 732 IPR001680 GO:0005515
Vifa4g00999 883 SMART WD40_4 562 597 IPR001680 GO:0005515
Vifa4g00999 883 SMART WD40_4 835 881 IPR001680 GO:0005515
Vifa4g00999 883 SUPERFAMILY WD40 repeat-like 569 880 IPR036322 GO:0005515
Vifa4g00999 883 MobiDBLite consensus disorder prediction 83 123 - -
Vifa4g00999 883 ProSiteProfiles Protein kinase domain profile. 29 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00999 883 SMART serkin_6 51 377 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00999 883 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 743 776 - -
Vifa4g00999 883 Pfam WD domain, G-beta repeat 742 774 IPR001680 GO:0005515
Vifa4g00999 883 Pfam WD domain, G-beta repeat 665 690 IPR001680 GO:0005515
Vifa4g00999 883 Gene3D - 542 883 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00999 Vifa-Chr4 287861090 287864196 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00999 654 823 Miscellaneous Gene Families AT5G08390 24.419 2.97e-07 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Vifa4g00999 WD40 0.19 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00999 K16240 - gmx:100802144 1103.2