Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00998 ATGGAACAATTTAGACAAATTGGCGAGGCCCTTGGAAGTTTAAAGGCTGTGATGGTGTTCAGGGAGAACATTCAAATCAATCAGAGACAATGTTGTGCTCTTCTAGATGTTTTCACCTTTGCATATGAATCTATAGCAGATGAGATCATACAGAATCTGAAATTTGAAGAGAAGAATGGAAAATGGAAGGTTCTAGAACAGCCCTTAAGAGAGATCCATAAGATTTTCAAAGAAGGAGAAGTTTACATTAAGCATTGTTTGGAAATAAAGGACTTTTGGGCTAAAGCCATTACATTGTGTCATAATACAGATTGTGTTGAGTTTTACATACACAACCTGTTATGTTGCATGCCTATTGTGATCGAGGCGATTGAATCGGCTGCTGAAACGTCGGGTTTGGATCTAGACGAGATGCAAAGAAAGAGGCTTATAAATTCGAATAAGTATAGAAAAGAATTTAGAGACATGAAGCTTTTCAAGTGGAAATTTGGTAAGCATTACCTCATTACTCAGGATTTGTGTAACCGTTACGATACGGTTTGGAAGGAAGACAGATGGTTTCTTTTCAACAAGATCCATGAAAAGAAAGTGTCGGGCGCGACAAAGTATGAGAGGAAATTGATAGATTTGCTTTTTAGGAATTTAGAAGTATCGGAGTCGTTGGAAGCTAAGCTTCTGCCGAGCTCGATATTGGTTGGTTCTAAGGACTATCAGGTGAGGAGAAGAATGGAGAATGGAAGTCAGTATAAAGAGATTCAATGGTTAGGTGAAAATTTCGTTTTAAGACATTTTTCGGGTGATATTGAGGCTTTGGAAAGTGAGATCAAAGAACTTCTATCTCTTTCGCATCCGAATATAATGGACTTTCTTTGTGGTTTTACTGATGAGGAGAAGAAAGAATGCTTTCTGTTAATGGAACTGATGAACAAAACTCTTTGCACTCATATTAAAGAGATTCACGGTCCGAGGAAGCGAATACCGTTCGTGCTTCATACCGCGGTTGATCTTATGCTTCAGATTGCGAGAGGAATGGAGTATCTTCATTCAAAGAAAGTGTATCATGGAGAATTAAACCCTACAAATATTCTTGTTAAGCCTAGAAGTGCGTTGCCAGAAGGTTACTTGCATTCCAAGGTATCGGGTTTTGGCTTATCTTCAGTTAAGGATTTGAACCAGAAAGGGAATGCGAATCAACATGGAACTCTCTCATTCATTTGGTACTCTCCTGAGGTACTTGAAGAGCAAGAACAATCGGGAGCTGCGTCGGTTTCTAAGTACACGGAGAAATCTGATGTGTATAGTTTCGGAATGGTTTGCTTCGAGCTTCTAACCGGTAAAGTTCCTTTCGAAGATAGCCATCTTCAAGGGGAGAAAATGAGCAGAAACATAAGGGCTGGAGAGAGGCCACTTTTTCCACTCAATTCACCGAAATACGTTATCAACTTGACGAAGAAATGTTGGCACACCGATCCGAATCAGCGTCCGAGTTTCTCGTCCATATGTAGAGTTCTTCGTTATATAAAAAGATTTCTCGCATTAAATCCCGGTTACAATAAAGAGATAGATCCACCAGTGCCACCTGTAGATTACTGTGATATAGAATCAGCACTTTTGAGGAAGTTTCCTTTTTGGGGAAGTTCTGGATCATCTATATCGAATATTCCTTTTCAAATGTTTGCGTACCGAGTTATCGAGCAAGAAAAAATGAATACAGGCTCTAAGGATAACTCCGAATCCGGAAGTGATGCTTCCGTCTGCGGTGACGAAACCGTTACGTCAGGAGACGAGCCGTTTCTAACCGTAATAGAAAAGAAACCTTCAGTTGGACCTGAGATTATAAACAACAGGAGGCTTGTATCGACAAGGAAGTTACTAGATTCGAGAGCCAAACAATCAGGTACACCAAAAGGGAGACTAGATAGACCTCCACAAATGATCCCTCAATCGCGAAGCATGCGGATGAGTTCAGATAAACATCTAATATCAAGTCCGAGGAGATTAACAAGATCATCTTCCGACTGCAGTCTTACAAGCATGGATTTATAG 2046 0.4013 MEQFRQIGEALGSLKAVMVFRENIQINQRQCCALLDVFTFAYESIADEIIQNLKFEEKNGKWKVLEQPLREIHKIFKEGEVYIKHCLEIKDFWAKAITLCHNTDCVEFYIHNLLCCMPIVIEAIESAAETSGLDLDEMQRKRLINSNKYRKEFRDMKLFKWKFGKHYLITQDLCNRYDTVWKEDRWFLFNKIHEKKVSGATKYERKLIDLLFRNLEVSESLEAKLLPSSILVGSKDYQVRRRMENGSQYKEIQWLGENFVLRHFSGDIEALESEIKELLSLSHPNIMDFLCGFTDEEKKECFLLMELMNKTLCTHIKEIHGPRKRIPFVLHTAVDLMLQIARGMEYLHSKKVYHGELNPTNILVKPRSALPEGYLHSKVSGFGLSSVKDLNQKGNANQHGTLSFIWYSPEVLEEQEQSGAASVSKYTEKSDVYSFGMVCFELLTGKVPFEDSHLQGEKMSRNIRAGERPLFPLNSPKYVINLTKKCWHTDPNQRPSFSSICRVLRYIKRFLALNPGYNKEIDPPVPPVDYCDIESALLRKFPFWGSSGSSISNIPFQMFAYRVIEQEKMNTGSKDNSESGSDASVCGDETVTSGDEPFLTVIEKKPSVGPEIINNRRLVSTRKLLDSRAKQSGTPKGRLDRPPQMIPQSRSMRMSSDKHLISSPRRLTRSSSDCSLTSMDL 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00998 681 Pfam Protein of unknown function (DUF1221) 21 234 IPR010632 -
Vifa4g00998 681 MobiDBLite consensus disorder prediction 665 681 - -
Vifa4g00998 681 Gene3D Transferase(Phosphotransferase) domain 1 246 514 - -
Vifa4g00998 681 MobiDBLite consensus disorder prediction 573 588 - -
Vifa4g00998 681 Pfam Protein tyrosine and serine/threonine kinase 268 503 IPR001245 GO:0004672|GO:0006468
Vifa4g00998 681 MobiDBLite consensus disorder prediction 623 681 - -
Vifa4g00998 681 ProSiteProfiles Protein kinase domain profile. 237 511 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00998 681 PANTHER SERINE-THREONINE PROTEIN KINASE 261 509 - -
Vifa4g00998 681 Coils Coil 261 281 - -
Vifa4g00998 681 SUPERFAMILY Protein kinase-like (PK-like) 265 520 IPR011009 -
Vifa4g00998 681 MobiDBLite consensus disorder prediction 570 592 - -
Vifa4g00998 681 FunFam Kinase family protein 234 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00998 Vifa-Chr4 287858348 287860756 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00998 268 511 MAP Kinase Kinase Kinase AT1G14000 34.661 8.64e-26 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_Gdt Vifa4g00998 PK_Tyr_Ser-Thr 1e-40 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00998 - - lang:109336839 1095.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00998 4 287858348 287860756 Vifa4g00998 4 287858348 287860756 ECH