LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa4g00997	ATGTGGAGTTTCTATTTCCTCTTATGCATCTTCTTCATCTTCTTAACATCCTTTACATCCTCTTATCAACCTAGAAGATTCCTTCATCAACCTTTTGATCCACAAAACCCACTCTCACCTTCTCAACCACCAAACCCTTCACCTTCTCCACCTTCACCACCACCACCAAATCCTAAATATCCATTTTCCACAAATACCCCTAATGCCTCTTCATCTTCCACACCCTTTTTCCCAACCTACCCTTCACCACCACCCCCACCTTCACCTTCTACCTTCGCTTCATTCCCCGCAAACATCTCCTCTCTCATCCTCCCTCAAACCCCTAAACCCAGCTCATCTTCTTCCAAACTCCTCGCCGTCGCCATTGCCTCCGTTCTCGCCGCCCTCGCCGTTCTCTCCGTCTCCGCTTTCATCTACTGCCGCAGACGCCGGAGGCGCTTCACCGGAGATGACAAAACACTCAGATCCGATAGCAGTATACGCCTCTTCCCTCGCGACGGTGCTGCCGCTGTAGTAGCCAAATCGCGAAACGTTTCGTCTACTAGCTCCGAGTTTCTTTATCTTGGTACCATTGTTAACTCTCGTGGCGATGATCTACCTGATTCTCGTGGTGCCGGTGGTGGTGGTCGTAATCCTCGGAAAATGGACTCGCCGGAGCTTCAGCCGTTACCGCCGCTTGCGCGACAAGGCTCGAGGGTTTACGATGGAGGTGCTCCGGTGGGGGATGGTGAAGATGAGGAAGAGGAGTTTTACTCGCCGAGAGGCTCTTTGAACGGGAATGGATCGGGTTCTCGGAGAATCTTCGCCGGGATTTCAGCTGAGAATTTGGTCGGTCGAAGTAGCAATGAATCTACTTCTTCTTCATCTTCTTATTCGTCTTCTTCTGCTTCACCTGATCGTTCTCACTCTATTAGTCTCTCGCCGCCGGTTAGTTTAAGTCCGAGAAGATCACAATCAAAGTCACCGGAAAATGTACTATCTCCGGCACCGACACAGCAATTAAGCGGCAGCGACGGTGGAAGAAATGGAAGAAGCTCGGTGTCTTCATCACAAGCTTCTTCTAACCGAAACGCGAGGTCTGCTTCTTCAATGTCTTCAACGCCGGAGAAAATCTTTGCCGGAGAATGTCAATCGCCGTCTTTATCGCCGCTTAACCTTTCACCGACGAAAAACTCTAATGGGCCTGTTGTTAAGCTCGTAAAGACTGAATCTTGTAATGGAGATGCTTCTTCACCAAGGTTATCGAATGCTTCTAGTGGTAAATCTTCGTCTTCGGCGTTTACTCTGCCGTCGCCGGAGAAAGTTACAATGATGCATCATCATACCAATCATGGGTTGGATCAGTCTCCAACAATTTCAGATGTTTCAGATCGGTTTAGACATTCTCCTCTTTCTTCATTGCCACTTTCACCAACGCTTCTTTCATCTCCAGAGAGAGAGATGAACACGATGAACACTCAACCACCACCACCGCCGCCTCCTCCACCTTCTAGAAAGCATTGGGAGATTCCAGACCTGTTAACACCAATTGCTGAAACACCAAGTGTTTTGATTCAACATGGTGTTGTATCTCAAAGGAAACAATGGGAAATACCGGTTCTTTCCACACCAATTGCACCTTCTCTTAAAGTTTCAGCCCCACCGCCGCCACCCCCACCACCACCGGCATTGTCACTGCGACAACGGAAGCAATGGGAAGTACCTTCTCCAACAACTCCTGTCGGTCAACCGGTGGTTTGTAGGCCACCGGAACTGAAACCTCCTTCAAGGCCGTTTGTGTTGCAAACCCCTCCAAATACATTGGTTTCTCCTGTTGAATTGCCACCTAGTTTTGAGGAGAATGCAGAAGAGGTTTTGAAACCGAAGTTGAAGCCTTTACATTGGGATAAAGTGAGGGCTAGCTCTGATCGTGAAATGGTTTGGGATCATTTGAGGTCCAGCTCTTTTAAGTTGAATGAAGAAATGATAGAAACATTGTTTGTGGTGAACACGCCGAATCCAAAACCAAAGGATGCTACTCCCCGATCAGTTCTTGCACCTCAATATCACGAGGATAGGGTGTTGGATCCTAAAAAGTCTCAAAATATTGCTATCTTACTTCGAGCTGTTAATGTTACGGTAGAGGAAGTGTGTGAAGCACTGTTAGAAGGTGTTACTGATACACTTAATACCGAACTGCTTGAAAGCTTGTTAAAAATGGCGCCAAGCAAGGAAGAAGAACGCAAATTGAAGGAATATAAAGAGGACACTCCAAACAAACTTGGTCCTGCTGAGAAGTTTTTGAAGGCAGTGCTTGATGTACCTTTCGCATTTAAAAGGGTCGAAGCTATGCTTTACATAGCCAATTTCGAATCTGAAGTGGAGTATCTTCGGAAATCGTTTCAAACTCTAGAGGTTGCATGTGAAGAGCTGCGAAACAGTAGAATGTTCTTGAAGCTACTAGAAGCTGTACTGAAAACCGGGAACCGCATGAATGTTGGAACAAACCGAGGTGATGCGCATGCGTTCAAGCTCGATACACTTCTAAAGCTGGTTGATGTCAAAGGCGCAGACGGAAAAACAACTCTTCTGCACTTTGTTGTACAAGAAATCATTAGAACCGAAGGAGCTCGTCATTCAGATACCACCACCACTACTACTACTACTAGTGTTACTAGTCAAACACCAAGCACAACATCAAGCGACGACGCCAAGTGTAGGAGGCTTGGTCTTCAAGTAGTATCTAGTCTAAGTTCCGATCTAGCGAATGTTAAGAAGGCTGCAGCAATGGACTCTGAAGTTCTCACAAGCGAAGTCTCTAAACTTTCGAAAGGAATCACACACATTACCGAGATTGTGAAATTGAATCAAACAGCAGGATCTGACGAAACTGTTGGTAAATTCACAGAATCAATGAACAAGTTCATGAAAATGGCCGAGGAAGAGATTGTAAGAATCCAAGCACAAGAAAGTGTTGCATTATCACTCGTGAAAGAGATCACAGAGTATTTTCATGGAAACTTATCTAAAGAAGAAGCTCATCCATTTAGAATCTTCATGGTAGTAAGAGATTTCTTAACAGTTCTTGATAGGGTATGCAAAGAAGTTGGTAATATAAACGAAAGGACCATGATTAGTTCAGCTCATAGATTTCCTGTTCCAGTGAACCCTATGCTTCCACAACCACTTCCTGGATTACATGGAAGGAAACATTACAGTTCCTCAGATGATGATAATCCATCGCCGTAG	3228	0.4569	MWSFYFLLCIFFIFLTSFTSSYQPRRFLHQPFDPQNPLSPSQPPNPSPSPPSPPPPNPKYPFSTNTPNASSSSTPFFPTYPSPPPPPSPSTFASFPANISSLILPQTPKPSSSSSKLLAVAIASVLAALAVLSVSAFIYCRRRRRRFTGDDKTLRSDSSIRLFPRDGAAAVVAKSRNVSSTSSEFLYLGTIVNSRGDDLPDSRGAGGGGRNPRKMDSPELQPLPPLARQGSRVYDGGAPVGDGEDEEEEFYSPRGSLNGNGSGSRRIFAGISAENLVGRSSNESTSSSSSYSSSSASPDRSHSISLSPPVSLSPRRSQSKSPENVLSPAPTQQLSGSDGGRNGRSSVSSSQASSNRNARSASSMSSTPEKIFAGECQSPSLSPLNLSPTKNSNGPVVKLVKTESCNGDASSPRLSNASSGKSSSSAFTLPSPEKVTMMHHHTNHGLDQSPTISDVSDRFRHSPLSSLPLSPTLLSSPEREMNTMNTQPPPPPPPPPSRKHWEIPDLLTPIAETPSVLIQHGVVSQRKQWEIPVLSTPIAPSLKVSAPPPPPPPPPALSLRQRKQWEVPSPTTPVGQPVVCRPPELKPPSRPFVLQTPPNTLVSPVELPPSFEENAEEVLKPKLKPLHWDKVRASSDREMVWDHLRSSSFKLNEEMIETLFVVNTPNPKPKDATPRSVLAPQYHEDRVLDPKKSQNIAILLRAVNVTVEEVCEALLEGVTDTLNTELLESLLKMAPSKEEERKLKEYKEDTPNKLGPAEKFLKAVLDVPFAFKRVEAMLYIANFESEVEYLRKSFQTLEVACEELRNSRMFLKLLEAVLKTGNRMNVGTNRGDAHAFKLDTLLKLVDVKGADGKTTLLHFVVQEIIRTEGARHSDTTTTTTTTSVTSQTPSTTSSDDAKCRRLGLQVVSSLSSDLANVKKAAAMDSEVLTSEVSKLSKGITHITEIVKLNQTAGSDETVGKFTESMNKFMKMAEEEIVRIQAQESVALSLVKEITEYFHGNLSKEEAHPFRIFMVVRDFLTVLDRVCKEVGNINERTMISSAHRFPVPVNPMLPQPLPGLHGRKHYSSSDDDNPSP	1075

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vifa4g00997	1075	PANTHER	FORMIN-RELATED	12	1069	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Vifa4g00997	1075	MobiDBLite	consensus disorder prediction	871	895	-	-
	Vifa4g00997	1075	MobiDBLite	consensus disorder prediction	484	500	-	-
	Vifa4g00997	1075	MobiDBLite	consensus disorder prediction	1050	1075	-	-
	Vifa4g00997	1075	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	613	1048	IPR015425	-
	Vifa4g00997	1075	Gene3D	Formin, FH2 domain	611	1032	IPR042201	-
	Vifa4g00997	1075	MobiDBLite	consensus disorder prediction	542	561	-	-
	Vifa4g00997	1075	MobiDBLite	consensus disorder prediction	275	431	-	-
	Vifa4g00997	1075	MobiDBLite	consensus disorder prediction	542	558	-	-
	Vifa4g00997	1075	Pfam	Formin Homology 2 Domain	620	1022	IPR015425	-
	Vifa4g00997	1075	SMART	it6_source	613	1037	IPR015425	-
	Vifa4g00997	1075	MobiDBLite	consensus disorder prediction	36	62	-	-
	Vifa4g00997	1075	MobiDBLite	consensus disorder prediction	29	88	-	-
	Vifa4g00997	1075	MobiDBLite	consensus disorder prediction	442	483	-	-
	Vifa4g00997	1075	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	547	1035	-	-
	Vifa4g00997	1075	MobiDBLite	consensus disorder prediction	197	500	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa4g00997	Vifa-Chr4	287600337	287604236	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa4g00997	67	322	FH2 protein (formin) Gene Family	AT3G25500	46.324	2.01e-26	115

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa4g00997	-		-	gmx:100802678	1240.71