Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00990 ATGGAAATTCAATCACAACAACATAAAAAACAAGAATTTGAAGCAGAAGGAGAAGAAAATAGGTTGCTACAATTAGAAGAATGTGAGACAATACCATTGTCCTTGCCGCAGCAGTCATCTCTATCAATATCGTTGGAAGGTGTTGATAGAGAAGACTGTGTCTACGCGGCGAAGGACAAAATTCATATTTTCGACTTGGAGTCGAATGGAAATATCAACGGATCAACGGTGGTGCCACCTTTCTCATGGAAGAAGCTCTGGCTCTTCACGGGGCCAGGGCTTCTGATGAGCGTGGCATTTTTGGATCCGGGAAACTTGGAAGGAGACTTACAAGCCGGTGCAATCGCAGGGTACTCGTTGCTATGGCTTTTAATGTGGTCCACCATCATGGGGCTCTTAATACAACTTTTGTCGGCGAGGCTCGGTGTTGCCACCGGGCGACACTTGGCGGAGCTTTGTAGGGAGGAGTATTCCAATTGGGCTAGGCTAGTTTTGTGGTTTTTAGCTGAGTTGGCTTTGATTGCTGCTGATATTCAAGAGGTTATTGGTAGTGCTATTGCTCTTAAGATTCTTAGCCATGGGTTTCTTCCCATTTGGGCTGGTGTTGTAATCACAGCCTTTGATTGTTTTTTCTTTTTATTTTTGGAGAATTATGGTGTAAGGAAGTTGGAAGGTGTTTTTGCTGTTTTCATTGGAACTATGGGCTTTTCATTTGCATGGATGTTCTTTGATACAAAGCCAAATGAAGAAGAACTTCTTATGGGTCTTTTGGTTCCAAGAGTTAGCTCAAAAACGCTACGCCAAGCAGTGGAAATTGTAGGATGCGTAATAACCCCACACAATGTATTTCTCCATTCCGCGTTAGTACAGTCAAGAGACATAGACATACGAAACAAAGGCCAAGTTCAAGAGGCTCTAAACTACTACTCAATTGAATCCTCAATTGCACTTTTAATCACATTAATAATCAACCTATTCGTAATAACAGTTTTCGCTAGAGTGTTCTATGGCACAGAACAAGCCAAAGACATAGGACTAGTAAATGCAGGACAATATCTTGAAGAAAAATATGGTGGTGGATTTTTTCCAATTCTTTACATTTGGGGCATTGGTTTATTAGCAGCAGGACAAAGTAGTACAATTACTGGTACTTATGCAGGACAGTTTATAACTGAGGGATTCTTGAAATTGAACATAAAAAAATGGCTGAGGGCATTGATTACTAGAAGTTGTGCTATTGTTCCAACTATGATTGTGGCAATAGTTTTTAATACTTCAGAAGGTTCTTTGGATACTTTGAATGAATGGCTTAATGTGCTTCAAGCTATACAAATTCCTTTTGCACTTATTCCTCTTCTTACTTTGGTGTCTAAAGAAGAGGTCATGGGCACATTCAGAATTGGACCTCTTTTAGAGAGGGTGGCATGGACAGTGGTGGTGCTAGTGATAATGCTTTATGGATATATGTTGTTAGATTTCTTTCTCTCTGAAGTGAAGGGACTATTGTTTGGATTATTAGTGTTCCTTGGTGCAGCAGCATGGATTTCATTTATTGCTTTTCTTCTAAAACATAGTGGTGCTATTTCTTCTATCTTTCTCAGATCTCCAAATTCTGAAGGCTTTTCTCTTGCAAATTGA 1638 0.3999 MEIQSQQHKKQEFEAEGEENRLLQLEECETIPLSLPQQSSLSISLEGVDREDCVYAAKDKIHIFDLESNGNINGSTVVPPFSWKKLWLFTGPGLLMSVAFLDPGNLEGDLQAGAIAGYSLLWLLMWSTIMGLLIQLLSARLGVATGRHLAELCREEYSNWARLVLWFLAELALIAADIQEVIGSAIALKILSHGFLPIWAGVVITAFDCFFFLFLENYGVRKLEGVFAVFIGTMGFSFAWMFFDTKPNEEELLMGLLVPRVSSKTLRQAVEIVGCVITPHNVFLHSALVQSRDIDIRNKGQVQEALNYYSIESSIALLITLIINLFVITVFARVFYGTEQAKDIGLVNAGQYLEEKYGGGFFPILYIWGIGLLAAGQSSTITGTYAGQFITEGFLKLNIKKWLRALITRSCAIVPTMIVAIVFNTSEGSLDTLNEWLNVLQAIQIPFALIPLLTLVSKEEVMGTFRIGPLLERVAWTVVVLVIMLYGYMLLDFFLSEVKGLLFGLLVFLGAAAWISFIAFLLKHSGAISSIFLRSPNSEGFSLAN 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00990 545 Pfam Natural resistance-associated macrophage protein 107 468 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa4g00990 545 PRINTS Natural resistance-associated macrophage protein signature 165 191 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa4g00990 545 PRINTS Natural resistance-associated macrophage protein signature 269 292 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa4g00990 545 PRINTS Natural resistance-associated macrophage protein signature 404 421 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa4g00990 545 PRINTS Natural resistance-associated macrophage protein signature 220 241 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa4g00990 545 PRINTS Natural resistance-associated macrophage protein signature 376 395 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa4g00990 545 PRINTS Natural resistance-associated macrophage protein signature 438 457 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa4g00990 545 PRINTS Natural resistance-associated macrophage protein signature 195 214 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa4g00990 545 Hamap Divalent metal cation transporter MntH [mntH]. 72 494 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa4g00990 545 NCBIfam Nramp family divalent metal transporter 91 460 - -
Vifa4g00990 545 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 34 522 IPR001046 GO:0016020|GO:0030001|GO:0046873
Vifa4g00990 545 NCBIfam metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 84 462 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00990 Vifa-Chr4 285826648 285828911 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00990 49 525 Inorganic Solute Cotransporters AT1G47240 73.795 0.0 733
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00990 K21398 - gmx:100801411 915.22