Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00980 ATGCCGAAGAACAAGGGAAAGGGAGGAAAGAATCGCAAGCGAGGAAAGAACGAAGCCGACGATGAGAAGCGCGAGCTGGTGTTCAAGGAAGACGGCCAAGAATACGCTCAGGTCCTCCGCATGCTCGGTAATGGTCGGTGCGAAGCGATGTGCATCGACGGAACAAAGCGTCTCTGTCATATCCGTGGGAAGATGCACAAGAAAGTTTGGATTGCTGCCGGTGATATTATTCTTGTTGGACTTCGTGATTATCAGGATGATAAGGCGGATGTGATTTTGAAGTATATGCCCGATGAAGCGAGGCTGCTTAAGGCGTATGGGGAGCTGCCGGATAATACGAGGTTGAATGAAGGGATTGGGGGTGGGCTTGATGAGGAGGATGATGGGGATGGTAATGATTATATCGAGTTTGAGGACGAGGATATTGATAAGATTTAA 438 0.4886 MPKNKGKGGKNRKRGKNEADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPDNTRLNEGIGGGLDEEDDGDGNDYIEFEDEDIDKI 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00980 145 PANTHER EIF-1A 1 145 IPR001253 GO:0003743|GO:0006413
Vifa4g00980 145 ProSiteProfiles S1 domain IF1 type profile. 22 96 IPR006196 GO:0003723|GO:0003743|GO:0006413
Vifa4g00980 145 ProSitePatterns Eukaryotic initiation factor 1A signature. 41 63 IPR018104 GO:0003743|GO:0006413
Vifa4g00980 145 Hamap Translation initiation factor 1A [eif1a]. 16 110 IPR001253 GO:0003743|GO:0006413
Vifa4g00980 145 NCBIfam translation initiation factor eIF-1A 14 110 IPR001253 GO:0003743|GO:0006413
Vifa4g00980 145 FunFam Eukaryotic translation initiation factor 1A 2 145 - -
Vifa4g00980 145 Pfam Translation initiation factor 1A / IF-1 32 93 IPR006196 GO:0003723|GO:0003743|GO:0006413
Vifa4g00980 145 Gene3D - 2 145 IPR012340 -
Vifa4g00980 145 CDD S1_IF1A 33 109 IPR001253 GO:0003743|GO:0006413
Vifa4g00980 145 MobiDBLite consensus disorder prediction 1 25 - -
Vifa4g00980 145 MobiDBLite consensus disorder prediction 122 145 - -
Vifa4g00980 145 MobiDBLite consensus disorder prediction 116 145 - -
Vifa4g00980 145 SUPERFAMILY Nucleic acid-binding proteins 2 144 IPR012340 -
Vifa4g00980 145 SMART eIF1neu4 28 110 IPR001253 GO:0003743|GO:0006413
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00980 Vifa-Chr4 284554748 284555185 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00980 1 145 Eukaryotic Initiation Factors Gene Family AT2G04520 89.655 6.45e-90 256
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00980 K03236 - aew:130751613 270.396