Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00962 ATGTTCATATTGGAACTTAAAAGAAAGAATCTTGATATGTGTATTGTTCATATTGGTTCTAAATTATTTCTACCTTCCAGTGTGACTATCATTGTGGCATATCTGATGAAATCTCGTGGAATGAAATTATCTGAAGCTCCGCAACATGTTAAGAACAAAAGACCAAAAACAGCTCCTAATCGTGGTTTCATTCGTCAATTGGAAGACTTTGAGAAATCTCTTCAAGAAAAACCTGCCCCGAAGAAACAGAAGGTAGAAGTGGAGCTGGGAACAAGAAGTGTTGAACCTGCTCCTTCGTACATAAAAATCAATCATCTAAAGGATCCTGTGAATCCTTTGGCAATAATGTGTGATGCAAAGCTTAAGGAGATCTTTGGCTGTGAAAGCATTTCAGCATTGGAGATACCTGAAGTTTTGGGCCGCCATCATATTTTTAGGAGATCATGA 447 0.3781 MFILELKRKNLDMCIVHIGSKLFLPSSVTIIVAYLMKSRGMKLSEAPQHVKNKRPKTAPNRGFIRQLEDFEKSLQEKPAPKKQKVEVELGTRSVEPAPSYIKINHLKDPVNPLAIMCDAKLKEIFGCESISALEIPEVLGRHHIFRRS 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00962 148 Gene3D Protein tyrosine phosphatase superfamily 26 95 IPR029021 -
Vifa4g00962 148 Gene3D SWIB/MDM2 domain 96 147 IPR036885 -
Vifa4g00962 148 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 27 77 IPR029021 -
Vifa4g00962 148 SUPERFAMILY SWIB/MDM2 domain 99 143 IPR036885 -
Vifa4g00962 148 CDD SWIB_like 100 142 - -
Vifa4g00962 148 PANTHER DUAL SPECIFICITY PROTEIN PHOSPHATASE 27 88 - -
Vifa4g00962 148 Pfam SWIB/MDM2 domain 99 142 IPR003121 -
Vifa4g00962 148 ProSiteProfiles SWIB/MDM2 domain profile. 63 145 IPR003121 -
Vifa4g00962 148 Pfam Dual specificity phosphatase, catalytic domain 27 72 IPR000340 GO:0008138|GO:0016311
Vifa4g00962 148 CDD DSP 27 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00962 Vifa-Chr4 278623051 278625077 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00962 24 75 Protein tyrosine phosphatase (PTP) family AT3G06110 53.846 9.69e-13 60.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Vifa4g00962 SWIB 2.5e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00962 - - gmx:100801960 108.612