Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00955 ATGTCTTCCTCAAACCCTTACAGTTACCCTCCACCACCTCCACCACCTCCGCCGCCGCTACCTTACCTCTCCAACCTCGGCTTCGGTTACTCCATCGCCATAGCTCTCGGCTTCCTCTTCCTCCTCTCAACTCTCATCCTCTCTTCCTACCTCTGTTGCCGCACTTTCCGTAACCGTCGCAACAACAACAGTAACAACAACAGCGGTCAACGAAACACAGACGGTATTGTTCTCCCGCGTGTGATTTTTGTTGCGGAAGATGATGATAATGATCGGGACGACGCCGTTTTGGGATTGGACCAGAGCGTGATCAACTCTTACCCGAGGCTGCAGTATGGGAAAGAGATGATGATGGGACGTGAGAGTACTTGCTCGATCTGTTTGTGTGAGTATAAGGATTCGGAGATGCTGAGGATGATGCCGGAATGTCGACACTATTTTCATCTGTGTTGTCTTGATTCGTGGTTGAAGCTTAATGGTTCTTGTCCGGTGTGTCGGAATTCGCCTATGCCGACGCCGTTGTCCACGCCGTTGCAGGAGGTTGTTCCGCTTTCTCATTACATTGGTGAAAGGAGAACAAGGAGGTGA 588 0.5085 MSSSNPYSYPPPPPPPPPPLPYLSNLGFGYSIAIALGFLFLLSTLILSSYLCCRTFRNRRNNNSNNNSGQRNTDGIVLPRVIFVAEDDDNDRDDAVLGLDQSVINSYPRLQYGKEMMMGRESTCSICLCEYKDSEMLRMMPECRHYFHLCCLDSWLKLNGSCPVCRNSPMPTPLSTPLQEVVPLSHYIGERRTRR 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00955 195 PANTHER RING-H2 FINGER PROTEIN ATL67 1 194 IPR044289 GO:0016567|GO:0016740
Vifa4g00955 195 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 171 IPR013083 -
Vifa4g00955 195 SMART ring_2 124 165 IPR001841 -
Vifa4g00955 195 Pfam Ring finger domain 123 166 IPR001841 -
Vifa4g00955 195 SUPERFAMILY Formin homology 2 domain (FH2 domain) 10 19 - -
Vifa4g00955 195 SUPERFAMILY RING/U-box 105 171 - -
Vifa4g00955 195 ProSiteProfiles Zinc finger RING-type profile. 124 166 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00955 Vifa-Chr4 278034959 278035546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00955 21 188 C3H Transcription Factor Family AT5G07040 39.412 9.96e-38 126
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00955 - - gmx:112997685 250.751