Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00946 ATGGAGTCAGATTGGGATCTATATGCTGTTGTCAGAGGCTGCACCACCGCAACCTCCACCACCACCGCAACCTCCACCACCACCGCCGCAAAAACCACCAGTACTACTACTACTATACCTTCTTCAGCTTATTTCTCTATTTACCCTGCTGAACAATCCGGTCAAGTTTTATCAATTTCAAACCCTTATGAATCAAGAAGTTCAGTTGGAGAATTACATGAACTTTGTAAACCTTTCTTCCTCAAATCACAGCCTCTCTCTTCAAATTCATTCTCTTATTCCTCACCATCACCAAAATCAACTGGTCAAACAAAACAACAGCAGCTTAATAAGCAGCCTCAACATACCGGTTCTGCTACAACCCCAAGATCTAAAAGAAGGAAGATTCAGCATAAGAAGGTTTGTGAAGTACAAGCTGAGAATCTCTCATCAGACATATGGGCATGGAGGAAATATGGTCAGAAACCAATCAAAGGTTCACCATATCCAAGAGGATATTATAGATGTAGCAGTTCAAAAGGGTGTTTAGCTAGAAAACAAGTTGAGAGGAACAAAACAGACCCAACAATGTTCATAGTAACATACACTGGTGAACATAGTCATCCTGCTCCAACTCATAGGAATTCCCTTGCTGGTTCGACACGACAAAAGCCTTCGTCACCGCAAGCTGTCACGGCCGAAGACTCTTCGCAACCCTTTACAAAACAAGTTTCTCCGTCAACCTCAGAGGCTGAAGAGGAAGAAGCTACACCTTCGAAGTCGGAAAGCAGAGAGGATTTGGAAGATTTGATGAATGATGATGAGGAAAATGAATTTGAGTTATCTGATATGGTTGTAACAGATGATTTCTTTGAAGGTTTAGATGAATTGACAGGATTTGCTGGAAAAACAGTAGCTTCATCTGGTGGTGACTGTTTTGGTGACCCTTTTGCAGCTAATATTGCACTTCCTGCTTGTGGTGGTCAATGA 969 0.4211 MESDWDLYAVVRGCTTATSTTTATSTTTAAKTTSTTTTIPSSAYFSIYPAEQSGQVLSISNPYESRSSVGELHELCKPFFLKSQPLSSNSFSYSSPSPKSTGQTKQQQLNKQPQHTGSATTPRSKRRKIQHKKVCEVQAENLSSDIWAWRKYGQKPIKGSPYPRGYYRCSSSKGCLARKQVERNKTDPTMFIVTYTGEHSHPAPTHRNSLAGSTRQKPSSPQAVTAEDSSQPFTKQVSPSTSEAEEEEATPSKSESREDLEDLMNDDEENEFELSDMVVTDDFFEGLDELTGFAGKTVASSGGDCFGDPFAANIALPACGGQ 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00946 322 FunFam WRKY transcription factor 22 127 197 - -
Vifa4g00946 322 MobiDBLite consensus disorder prediction 246 260 - -
Vifa4g00946 322 Pfam WRKY DNA -binding domain 145 202 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa4g00946 322 MobiDBLite consensus disorder prediction 196 275 - -
Vifa4g00946 322 SUPERFAMILY WRKY DNA-binding domain 140 204 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa4g00946 322 SMART WRKY_cls 143 203 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa4g00946 322 Gene3D WRKY domain 127 197 IPR036576 GO:0003700|GO:0006355|GO:0043565
Vifa4g00946 322 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 4 291 IPR044810 GO:0003700
Vifa4g00946 322 ProSiteProfiles WRKY domain profile. 138 204 IPR003657 GO:0003700|GO:0006355|GO:0043565
Vifa4g00946 322 MobiDBLite consensus disorder prediction 261 275 - -
Vifa4g00946 322 MobiDBLite consensus disorder prediction 201 245 - -
Vifa4g00946 322 MobiDBLite consensus disorder prediction 90 132 - -
Vifa4g00946 322 MobiDBLite consensus disorder prediction 90 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00946 Vifa-Chr4 277074890 277076263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00946 1 321 WRKY Transcription Factor Family AT4G01250 47.181 3.14e-83 252
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Vifa4g00946 WRKY 1.2e-25 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00946 K13425 - gmx:100798084 343.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00946 4 277074890 277076263 Vifa3g02861 3 804182321 804183685 ECH
Vifa4g00946 4 277074890 277076263 Vifa4g00946 4 277074890 277076263 ECH