Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00944 ATGGTGGATAGCGGCGAATTCGCCGGCACCATTTGTTCCATCTGCTACGAATCTCTAAACCCCATCACCGAAGATCTCCAAGCCGTCACCATCTGCGGCCACGTCTTCCACGAGCTCTGTTTGCAGCAATGGTTCGAGTACTGTGCGACATCGAAGAAACGCACTTGTCCTGTTTGCAAGCAAGGTTGCAAGGTGAAAGATGCGTGTCGGCTTTATTTTCAATCGGTTGGAGATGCGAAGGAAGGTGGTCTTACTCAGAAGCAAAGAGGTGTCGAGGAAGATCCTGGGGTTTTGAGAAAGGAGGTTAAGAGATTGGAGGGGAAAGTTTCTGGGCTTAGTACGGTGTTGGAAAATCAAACTAAGGAATTGGATGATCTTAAAGATGAGCTTTCTACTTGCAAGGAGCAGAAAAGGGTAGAAATAGCATCAAAGAATGAAGCCTTGAGGAAAAACGCATCCATACAAGTCCAGTTTCGTGAAAAATCAACGGAGCTTGAGAAGTCAAATTTGGAGCGTTTTAGATTGCAAGAGAGAAATATGGCTTTGGCTAAAGAACTTGCAGCATTGAAATTAGTGTCTGATTTAGATCTTGGTGAAGACGAGGTTTTGAAGCTTGCCACTTTGGGTAATGGGGCCAACAGTAAAGAAACAGTAGACACTTTGAAAAGATCTCTTGTCCTGCGGAACAGGAGTTACAAAGAGTTAATGGCCAAGTGTAATCTTCTTGGAAGAGGCGAGGCTCGTTATAGTAAAAAGCTTGAGAAGGCTAAAGAGAAGATCAATAAAATGAAGGCAAGGGTACAAGAACTGGCGACGGCGTTGGAAGTAAAAGAAAATGAATATTTGAAGCTACTAAAAGTTGCCAAGAATGTTGAAAATAAAATAAATTCTAATTCAGATGTATCGACGGCTAACAAATTTTCTTCTAAAGAGCAAAGCAAACAAAGTCCAACACCCAAGTCTGGAATGGATCTGAATAAGAACGGCAACCTCAAATCTTTACTATCTTTGAAGATAGATAACTCCAAAGCTACAGAAAATAAGGATGTGGATATTGATTGTATCATTATCGATGAAAACGAATACAAAGATCATAACAAGGTTGATCTAGCAAAGCCAGAAACAGCACCTGTCTCAAAGACTAAAACATCATTGCAAGGAATATGTAATTTGGACGAGTCTTCAAGATTTGACAGCGACACTGAAATGACTGACATTACTGCTGCCACTATGGATGACGATGTGACATTACAAGCTAATGCTAAACAAGCTCAACCAATAGTTAACATTAGAAAGGAATCACCATTGACAACTTCAAGTTCAGTGGACATATGCTTTTCTGGTGGATTGCTTGGTCCTGATGGATCTCAACGATTCTTGGGTAAATGGTGCAAGCGTGGACAAAATGGTGAATCCACAAAAGGGAATTTGATATCCGTAGGAGCTGATGGTAGAGGTGGCACAGTCAAAGTTCTAAGGAATCCTAGCCAACCCTTCTCGGATGGTAAGGAAAATTCAGTAGCTTCAAAAAGGTTGAAGGTTGGACCTAATAAAGCAAGTGGTATGCAGTCCAGGGGGAACCTGCAGATTGAACACTTTTTTGGTAGGGTCGGTCAGTAA 1620 0.4167 MVDSGEFAGTICSICYESLNPITEDLQAVTICGHVFHELCLQQWFEYCATSKKRTCPVCKQGCKVKDACRLYFQSVGDAKEGGLTQKQRGVEEDPGVLRKEVKRLEGKVSGLSTVLENQTKELDDLKDELSTCKEQKRVEIASKNEALRKNASIQVQFREKSTELEKSNLERFRLQERNMALAKELAALKLVSDLDLGEDEVLKLATLGNGANSKETVDTLKRSLVLRNRSYKELMAKCNLLGRGEARYSKKLEKAKEKINKMKARVQELATALEVKENEYLKLLKVAKNVENKINSNSDVSTANKFSSKEQSKQSPTPKSGMDLNKNGNLKSLLSLKIDNSKATENKDVDIDCIIIDENEYKDHNKVDLAKPETAPVSKTKTSLQGICNLDESSRFDSDTEMTDITAATMDDDVTLQANAKQAQPIVNIRKESPLTTSSSVDICFSGGLLGPDGSQRFLGKWCKRGQNGESTKGNLISVGADGRGGTVKVLRNPSQPFSDGKENSVASKRLKVGPNKASGMQSRGNLQIEHFFGRVGQ 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00944 539 SUPERFAMILY RING/U-box 10 66 - -
Vifa4g00944 539 ProSiteProfiles Zinc finger RING-type profile. 12 60 IPR001841 -
Vifa4g00944 539 SMART ring_2 12 59 IPR001841 -
Vifa4g00944 539 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 538 - -
Vifa4g00944 539 MobiDBLite consensus disorder prediction 298 327 - -
Vifa4g00944 539 Coils Coil 246 294 - -
Vifa4g00944 539 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 170 IPR013083 -
Vifa4g00944 539 Coils Coil 109 136 - -
Vifa4g00944 539 CDD RING-H2 12 60 - -
Vifa4g00944 539 Pfam Ring finger domain 11 60 IPR001841 -
Vifa4g00944 539 SMART ringv_2 11 60 IPR011016 GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00944 1 539 C3H Transcription Factor Family AT4G01270 42.029 5.63e-124 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00944 K11985 - gmx:100812811 647.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00944 4 276107328 276112127 Vifa4g00944 4 276107328 276112127 ECH