Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00931 ATGGTATCTGTGAACCCTAATCAAACACAAGCCTTTTACTTCTTCGATCCTTCAAACATGGGTCTTCCCGGCGTCAACCAACTTCCACCACCGCAACAACCACCTACTACCGCCGCCGCATCTACCTCTTCCGAGGATCCGAATAAGAAGATCCGGAAACCGTACACGATTACTAAATCCAGAGAGAGTTGGACTGACCAGGAGCATGATAAGTTTCTAGAAGCTCTCCAATTATTCGAACGTGACTGGAAGAAGATTGAAGCCTTTGTTGGTTCAAAAACTGTTATCCAGATACGGAGTCATGCACAAAAGTATTTTCTCAAAGTTCAGAAGAGTGGAACAAGCGAACACGTACCTCCTCCTCGGCCAAAGAGAAAAGCTGCTCACCCATACCCTCAAAAAGCTCCAAAAAACGTTCCTACTGCATCTCAAGTCACCGGGCCATTGCAATCGTCATCTGCTTTTGTTGACCCACCATACATTTATAGCACAGATTCATCATCTGTGCTTGGAACACCAGTTACTAGTCTGCCTTTGTCATCTTGGAATTATAATGCTAAACCACCAGCCAGTGTGCCACAACTGACTACAGATGACACGGGATGGACTGGATCTGGACAAGCTGCTCCTCTTAATTGTTGCAATAGCAGCAGTAATGACAGCACTCACCTTGCTTTGCCAAGTAGTAAAGGGATTAATCAAGGCAATGTGGGCAAGCCAGTTCATGTCATGCCAGATTTTGCACAAGTATACCACTTCATTGGCAGTGTATTTGATCCAAATTCAACAAATCACCTACAGAGGTTAAAGCAGATGGACCCAATTAATGTTGAAACGGCACTGCTATTGATGAGAAACCTCTCCATTAATTTAACGAGTCCAGAATTTGAGGATCATAAGAAGCTACTGTCGTCATATGATGCTAACAGTGAAAAGGAAAAGTTTGCTAAACCAAGCAGCAGCAAAGCCATGCCTGTTGTTAAATCTGAAAATGCCGTTTTTTCTGCTTAG 1011 0.4372 MVSVNPNQTQAFYFFDPSNMGLPGVNQLPPPQQPPTTAAASTSSEDPNKKIRKPYTITKSRESWTDQEHDKFLEALQLFERDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGTSEHVPPPRPKRKAAHPYPQKAPKNVPTASQVTGPLQSSSAFVDPPYIYSTDSSSVLGTPVTSLPLSSWNYNAKPPASVPQLTTDDTGWTGSGQAAPLNCCNSSSNDSTHLALPSSKGINQGNVGKPVHVMPDFAQVYHFIGSVFDPNSTNHLQRLKQMDPINVETALLLMRNLSINLTSPEFEDHKKLLSSYDANSEKEKFAKPSSSKAMPVVKSENAVFSA 336
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00931 336 PANTHER SWI/SNF COMPLEX-RELATED 35 298 - -
Vifa4g00931 336 SMART sant 60 108 IPR001005 -
Vifa4g00931 336 NCBIfam myb-like DNA-binding domain, SHAQKYF class 59 108 IPR006447 GO:0003677
Vifa4g00931 336 Gene3D - 64 111 - -
Vifa4g00931 336 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Vifa4g00931 336 MobiDBLite consensus disorder prediction 111 146 - -
Vifa4g00931 336 Pfam Myb-like DNA-binding domain 61 106 IPR001005 -
Vifa4g00931 336 CDD SANT 63 106 IPR001005 -
Vifa4g00931 336 ProSiteProfiles SANT domain profile. 59 110 IPR017884 -
Vifa4g00931 336 MobiDBLite consensus disorder prediction 22 55 - -
Vifa4g00931 336 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Vifa4g00931 336 FunFam protein REVEILLE 6 isoform X1 63 111 - -
Vifa4g00931 336 SUPERFAMILY Homeodomain-like 55 111 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00931 Vifa-Chr4 270157540 270164536 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vifa4g00931 Myb_DNA-binding 8.8e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00931 - - gmx:778090 491.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00931 4 270157540 270164536 Vifa4g00931 4 270157540 270164536 ECH