Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00930 ATGTCATTTTACGACCCATCTTTCATCAACACACAACTCTCCAAACAAACCTCAATCTTCGGTCTCCACCTCTGGGTCATCATCGGAATCCTCGTTGGCTCCTTCATCGTCATAACTCTCTTCCTCATCTCACTCTGTCTCACCTCCCGCCGCCGCAAAAACCACCACCACCACCAATCCAAAACCAACCTCAACACCCTCACTCCTATCATCTCCAAGGAAATTCAAGAGATCAAACAAACCCTCCAGAAACCCGAGATCCAAGCCGTTGACATGGTGAAACTCGAAATTCACCGACATGTGTCAACCAGTGGAGAGAGTAGAGTTACTTCTGGTAGTGTGTGTGAAACAGTGTCCTCGCGTGGAAGTATGGGGCCGGAAGTTTCGCATCTTGGGTGGGGGAGATGGTATACGCTTAGGGAACTTGAAGCTGCTACTAATGGTTTGTCTGAAGAGAGTGTTATTGGGGAAGGTGGTTATGGAATTGTTTACAAAGGTGTTCTTCCCGACGGGACCAGAATTGCTGTTAAGAATCTCTTGAATAACAAAGGCCAAGCTGAGAGAGAATTTAGAGTTGAGGTTGAAATAATCGGTCGTGTGCGACATAAGAATCTTGTTAGGTTGCTTGGATACTGTGTTGAGGGGGCACACAGGATGCTTGTGTATGAATATGTTGATAATGGCAATCTAGACGAATGGCTGCACGGGGATGTTGGACCTGTGAGTCCTATGACTTGGGATATCCGGATGAAAATTTTATTGGGCACGGCAAAAGGACTGGCTTATCTTCATGAGGGTCTTGAACCGAAAGTTGTTCACCGAGATGTGAAGTCAAGCAACATACTCATTGATCGCCAATGGAACGCCAAGGTTTCTGATTTCGGTCTTGCTAAGCTTCTGGATTCTGACCACAGTTTTGTCACGACTCGAGTCATGGGGACATTTGGTTATGTTGCGCCCGAGTACGCCTGCACTGGAATGCTGAATGAGAGGAGTGACGTGTATAGCTTTGGGATACTCATCATGGAAATAATTAGCGGAAGGACTCCCGTTGATTATAGCAGACCAAAAGGAGAGGTTAACTTAATTGAATGGTTAAAAGATATGGTTGGTAGTCGAAGATCCGAGGAAGTAGTTGATCCTAAGCTTTCTGAGAAGCCGTCTCTAAAGGCTCTTAAACGTGCTTTGTTGATTGCTCTTCGATGTGTTGATCCTGATTCCTCAAAGAGGCCTAAAATGGGACATGTGATCCACATGCTTGAAGCTGACGACGTCTTATTTCGCGAGGATCGAAGGAACGCCGGAGAATCTTCTCGTTCCCATCGTAACTATCAACGAGATCATATTGGTTTGAGTATAGATAAAAATCTGATAGGTGGAGAGATCACTGATCAAAGTGAAGATGATAGTAGTAGAAGTCACCATGAGCCTACTAGGTGGAAAAGATGA 1449 0.4534 MSFYDPSFINTQLSKQTSIFGLHLWVIIGILVGSFIVITLFLISLCLTSRRRKNHHHHQSKTNLNTLTPIISKEIQEIKQTLQKPEIQAVDMVKLEIHRHVSTSGESRVTSGSVCETVSSRGSMGPEVSHLGWGRWYTLRELEAATNGLSEESVIGEGGYGIVYKGVLPDGTRIAVKNLLNNKGQAEREFRVEVEIIGRVRHKNLVRLLGYCVEGAHRMLVYEYVDNGNLDEWLHGDVGPVSPMTWDIRMKILLGTAKGLAYLHEGLEPKVVHRDVKSSNILIDRQWNAKVSDFGLAKLLDSDHSFVTTRVMGTFGYVAPEYACTGMLNERSDVYSFGILIMEIISGRTPVDYSRPKGEVNLIEWLKDMVGSRRSEEVVDPKLSEKPSLKALKRALLIALRCVDPDSSKRPKMGHVIHMLEADDVLFREDRRNAGESSRSHRNYQRDHIGLSIDKNLIGGEITDQSEDDSSRSHHEPTRWKR 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00930 482 Pfam Protein kinase domain 151 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00930 482 CDD STKc_IRAK 155 421 - -
Vifa4g00930 482 Gene3D Phosphorylase Kinase; domain 1 127 224 - -
Vifa4g00930 482 FunFam Probable serine/threonine-protein kinase At1g01540 129 224 - -
Vifa4g00930 482 SUPERFAMILY Protein kinase-like (PK-like) 123 421 IPR011009 -
Vifa4g00930 482 ProSitePatterns Protein kinases ATP-binding region signature. 155 177 IPR017441 GO:0005524
Vifa4g00930 482 PANTHER OS01G0323000 PROTEIN 7 440 - -
Vifa4g00930 482 ProSitePatterns Serine/Threonine protein kinases active-site signature. 271 283 IPR008271 GO:0004672|GO:0006468
Vifa4g00930 482 MobiDBLite consensus disorder prediction 461 482 - -
Vifa4g00930 482 FunFam Putative receptor-like serine/threonine-protein kinase 225 435 - -
Vifa4g00930 482 ProSiteProfiles Protein kinase domain profile. 149 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00930 482 Gene3D Transferase(Phosphotransferase) domain 1 225 436 - -
Vifa4g00930 482 SMART serkin_6 149 427 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00930 Vifa-Chr4 269826613 269829143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00930 122 442 Receptor kinase-like Gene Family AT4G02010 44.648 3.33e-94 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Vifa4g00930 Pkinase 2.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00930 - - gmx:100777348 735.332