Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00928 ATGTCTGTTGTTGAATCAGCTGAGAATAATAACATCAGAGGAATACCAACTCATGGTGGACGCTATTTGCAGTATAATATCTATGGTAACCTTTTTGAGGTTTCAAGAAAGTATGTCCCTCCAATTCGCCCTGTCGGTCGAGGTGCTTATGGTATTGTTTGTGCTGCTGTAAATGCTGAAACACGCGAGGAAGTCGCCATTAAGAAGATTGGCAATGCATTTGACAACAGAATAGATGCTAAAAGGACCTTACGAGAAATCAAACTTCTTCGCCATATGGATCATGAAAATGTGATGTCCATTAAAGATATTATACGACCTCCGCAGAAGGAGAACTTCAATGATGTCTACATTGTTTCTGAGTTGATGGACACGGATTTGCATCAAATAATACGTTCCAATCAACCAATGACAGATGACCATTGTCGGTATTTTGTGTATCAGCTGTTACGAGGGCTCAAATACGTGCACTCAGCTAATGTGTTGCACCGAGACCTCAAGCCTAGCAATTTGCTACTGAATGCCAATTGTGACCTTAAGATTGGAGACTTCGGTCTCGCTAGGACTACATCAGAAACCGATTTCATGACTGAGTACGTAGTTACTCGGTGGTACCGAGCTCCCGAACTGCTTCTTAATTGTTCAGAATATACAGCAGCCATCGATATATGGTCTGTCGGTTGCATACTCGGTGAAATTGTAACAAGACAACCCCTATTCCCTGGAAGAGATTATGTTCATCAGCTGAGATTGGTCACAGAGCTGATAGGTTCACCCGATGATGCCAGCCTTGGATTCCTACGCAGCGAAAATGCTCGTAGATACGTAAGGCAACTTCCACAATATCCTAAACAAGATTTCGCTACTAGGTTTCCCAACATGTCTCCAGGTGCTGTTGATTTGCTTGAGAAGATGCTTGTCTTTGATCCAAGCAAGCGGATTAGAGTTGACGAGGCGTTGTGCCATCCATACATGGCACCTCTGCATGATATCAATGAGGAACCTGTATGTATCAGACCATTCAGTTTTGACTTCGAGGAACCGATGTTCACCGAAGAAGATATCAAGGAACTCATCTATAAAGAGTCTGTGAGGTTCAATCCTGATCCTAATCTTTGCATATGA 1125 0.4276 MSVVESAENNNIRGIPTHGGRYLQYNIYGNLFEVSRKYVPPIRPVGRGAYGIVCAAVNAETREEVAIKKIGNAFDNRIDAKRTLREIKLLRHMDHENVMSIKDIIRPPQKENFNDVYIVSELMDTDLHQIIRSNQPMTDDHCRYFVYQLLRGLKYVHSANVLHRDLKPSNLLLNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTAAIDIWSVGCILGEIVTRQPLFPGRDYVHQLRLVTELIGSPDDASLGFLRSENARRYVRQLPQYPKQDFATRFPNMSPGAVDLLEKMLVFDPSKRIRVDEALCHPYMAPLHDINEEPVCIRPFSFDFEEPMFTEEDIKELIYKESVRFNPDPNLCI 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00928 374 ProSitePatterns MAP kinase signature. 74 177 IPR003527 GO:0004707|GO:0005524|GO:0006468
Vifa4g00928 374 Gene3D Phosphorylase Kinase; domain 1 22 362 - -
Vifa4g00928 374 Gene3D Transferase(Phosphotransferase) domain 1 123 352 - -
Vifa4g00928 374 ProSiteProfiles Protein kinase domain profile. 39 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00928 374 SMART serkin_6 39 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00928 374 Pfam Protein kinase domain 43 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00928 374 SUPERFAMILY Protein kinase-like (PK-like) 42 332 IPR011009 -
Vifa4g00928 374 CDD STKc_TEY_MAPK 32 368 - -
Vifa4g00928 374 FunFam Mitogen-activated protein kinase 123 352 - -
Vifa4g00928 374 FunFam Mitogen-activated protein kinase 24 133 - -
Vifa4g00928 374 ProSitePatterns Serine/Threonine protein kinases active-site signature. 161 173 IPR008271 GO:0004672|GO:0006468
Vifa4g00928 374 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 37 326 - -
Vifa4g00928 374 ProSitePatterns Protein kinases ATP-binding region signature. 45 69 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00928 Vifa-Chr4 269109744 269113325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00928 6 368 MAP Kinase Gene Family AT4G01370 85.399 0.0 678
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Vifa4g00928 Pkinase 6.5e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00928 K20600 - gmx:100779469 704.901