Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00924 ATGTCTGCTGTTAGGTTTTCTCATGTAAGGTTTTTACATAGTTCAATCAAGGGTTGTTTCAATTTCCAAAATGTTCAAAATTACCCTAATAGGGCTTTGAATCTTGCAAGAGTTTCAAGTTTTTCGGTTGATTTGTCGAGCCGTTGTTATTCCAAAGGAAAGTTAGAGTCACCTAAGAAGTTTGCTCAGAACCAGTTTGGCAATTTGGCTTCTGTATCTGGTGAAAAGGGTTTGAATTCTGTGTTTGATTCTAGATTCTCTAGGGTATGTTTTCGAAGGAGTGTTGAATTGTCGAATGTTGCTTCGATGAGTCACGTGTTGAGTTCTCGAATGTATTCGTCGTCTTTAGGTGGGAAAGGAAGTAGGGACGGTGAAACGGAAGTGGGTGTTAGTGATAATGGTGGTGGTGATTCGGTTGTTTCGGGTGATTTGGTTGAGAGGGTGAAAGATACATGGAAGAGTGTTGCGGAGACTGCTTCTTATGCCGGGGAAAAGATTAAAGAAACTTCTGATGATCTCACTCCATATGTTCAACAGTTGCTTGATTCGCATCCTTATCTTAACATGGTGGTTGTTCCGGTTGGTGGTACTTTAACTGCTACGATAATAGGTTGGTTCTTTTTGCCGAGGATTTTGAGGAGATTTCACAAATATGGAATGCAAGGTCCCGTTGCTCTATTTCAAGGAGGCGTGCTTGGGGAGCCAGTTCCGTATGAGAAAAGCTTTTGGGGTGCTATGGAAGACCCAGTGCGATATTTAGTTACCTTCTTGGCATTCTCACAAATTGCTGTGATGGTAGCTCCAACAGCTATAGCCTCACAATATCTTGCTCCCACTTGGAGAGGTGCAGTGATACTTTCATTTGTATGGTTTTTGCATAGATGGAAAACAAATGTTTTTGCACGAACTTTGTCCAGTCAAAGTGTACTTGGACTTGATAGGGAGAAAATGCTTGCTCTAGACAAAATTTCATCTATTGGTTTATTTGTGATTGGTATAATGGCTTTGGCTGAGGCTTGTGGTGTGGCTGTGCAATCTATTGTAACTGTTGGTGGTGTAGGAGGAGTTGCTACTGCTTTTGCTGCCAGAGACGTACTTGGCAATGTGTTCAGTGGTTTATCCATGCAGTTTTCAAAGCCCTTTTCAATTGGAGATACAATAAAAGTATGTTGGTTTAGATGCAAATCAATGATCATTCCCGGTTTACTTTTTATGGGAAATATGATTTTCTGA 1233 0.4088 MSAVRFSHVRFLHSSIKGCFNFQNVQNYPNRALNLARVSSFSVDLSSRCYSKGKLESPKKFAQNQFGNLASVSGEKGLNSVFDSRFSRVCFRRSVELSNVASMSHVLSSRMYSSSLGGKGSRDGETEVGVSDNGGGDSVVSGDLVERVKDTWKSVAETASYAGEKIKETSDDLTPYVQQLLDSHPYLNMVVVPVGGTLTATIIGWFFLPRILRRFHKYGMQGPVALFQGGVLGEPVPYEKSFWGAMEDPVRYLVTFLAFSQIAVMVAPTAIASQYLAPTWRGAVILSFVWFLHRWKTNVFARTLSSQSVLGLDREKMLALDKISSIGLFVIGIMALAEACGVAVQSIVTVGGVGGVATAFAARDVLGNVFSGLSMQFSKPFSIGDTIKVCWFRCKSMIIPGLLFMGNMIF 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00924 410 Gene3D - 280 379 - -
Vifa4g00924 410 Pfam Mechanosensitive ion channel 322 389 IPR006685 GO:0016020|GO:0055085
Vifa4g00924 410 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 145 389 - -
Vifa4g00924 410 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 279 363 IPR011014 GO:0016020
Vifa4g00924 410 MobiDBLite consensus disorder prediction 114 135 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00924 87 388 Mechanosensitive Ion Channel Family AT4G00290 56.954 7.60e-116 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00924 K22047 - gmx:100789047 495.738