Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00918 ATGGCAATGGCATCTATCACCACCAAAGATGAAGCCTCTTCTTCTTGTTCTTCTTCAGTCCAAACATCAAAATGGACTAACCGTGTTTTCTTGAGTTTCAGAGGCGAAGACACTCGCCAAGGTTTCACTGACCATCTTTTTGCTTCATTGGAAAGAAGAGGGATCAAAACATTCAAGGATGATCATGATCTTCAAGGAGGTGAAGTGATATCAGTAGAACTCAATAAAGCCATTCAAGAGTCTATGTTTGCTGTCATCATTCTCTCACCAAACTATGCTTCCTCATCATGGTGTTTGGATGAGCTACAAAAGATTGTTGAATGCAGCAAGAGTTTTGGTCAGGCTGTTTTTCCAATCTTCCACGGTGTTGATCCGTCTGATGTCAGGCATCAGAGAGGAAGCTTTGAAGAAGCTTTTAGGAAACATGAACAAAAACTAGATAGAAACAAAATTGAAAGGTGGAGAGATGCTTTAAGAGAAGTTGCTAGTTACTCCGGTTGGGACTCCAAAGGCTGGAAGGAGGCATCATTGGTGGAAACAATTGCTGAACATATTCATAAAAAATTGATTCCCAAGTTGCCTGTTTGCAAAGATAACCTTGTTGACATTGATTCACGGATAGAGGAAATATATTCGCTTCTAGGAATGGGATTAAGCGATGTTCGCTTCATAGGCATATGGGGAATGGGCGGCATAGGGAAGACAACTATTGCTAGATCAGTATATGACGCGATCAAAGCGGAATTCAAGGTTAGTTGCTTTCTTGCAGACATTAGAGAAACAATTTCTAAGACAGATGGCTTAGTTCACATCCAAAGTGAACTTCTTTCTCATCTTAAGATAAGAGGTAACGATTTTTATAACGTTCATGATGGCAAAAAGATATTAGCTAACTCATTCAACAATAGAAAGGTTCTTCTTGTTCTTGATGATGTGAGTGAATTAAGCCAACTGGAGAATTTAGCTGGGAAGCAAGAATGGTTTGGTCCAGGGAGTAGAATAATCATCACAAGTCGAGATAAACACTTGTTATCCACACATGGAGTGCATGAAACTTATAAGGCTAAAGGCTTAGTGAAAAATGAAGCACTTAAGCTCTTTTGTTTGAGAGCCTTTAAACAAAATCAACCTGGAGAAGAGTATTTGAGTTTGTGTAAAGAAGTGGTTAAATATGCAAGAGGTCTTCCATTAGCACTTGAGGTATTGGGTTCACATTTTCATGGAAGAACTCTCGAGGTTTGGCATAGTGCTTTAGAACAAATGAGAAATGTTCCCCACTCCAAAATACATGATACATTGAAAATAAGCTACGACGGCTTACAATCTATGGAGAAAAATATGTTTCTAGATATTGCCTGTTTCTTCAAAGGAATGGACATAGATGAAGTAATAGAAATATTAGAAGATTGTGGTTATTATCCCAAAATTGGAATCGACGTTTTGATTGAAAGGTCTTTGGTAAGTTTCGATAGGGGGGACAAAAAGTTGTGGATGCATGATTTGCTTGAAGAAATGGGAAAAAACATTGTGTATCAAGAATCTCCTAATGATCCTGGAAAACGTAGTAGGTTATGGTCTCAAAAAGACATTGGTCAAGTATTGACAAAAAATAAGGGAACTGATAAAATTCAAGGCATAGCTATGAACTTAGTTCAACCATATGAAGCAAGCTGGAACATTGAAGCCTTTTCCAAACTAAGTCAGCTAAGATTACTCAAATTATGTGAAATAAAACTTCCCCGCGGCCTCAATTGCTTCCCGAGTTCGCTAAAAGTTCTTGATTGGAGAGGATGTCCTTTGAAAACCCTGCCACTAGCTAATCCTTTGGATGAAATTGTTAACCTCAGATTGTATCATAGCAAAATAGAACAACTTTGGCATGGAACACAGTTTCTCGAAAGTCTGAAGTTCATCAATTTGAGCTTTTCGAAGTCTCTAAAGCGGTCACCCGACTTTGTTGGTGTTCCAAATCTTGAATCATTGGTCCTTGAAGGTTGTACAAGCTTAACTGACATCCATCCCTCCCTTCTAAGCCACAAGAAACTTATTCTATTGAATTTGAAAGACTGCAAAAGGCTTAAAGCTCTTCCATGCAAAATAGAGATGAGTTCCTTGAAGGGTTTAACTCTTTCTGGTTGCTGTGAGTTCAATCATCTTCCAGAGTTTGACGAAAGCATGGATAATCTATTTAAGCTTTGTTTAGAAGAGACTGCGATAAAAAAACTACCATCTTCACTTGGATTTCTTGTATCACTTGTTCTGTTGGATTTAGAAAATTGTAAGAATCTTACTTGTCTTCCAGATACAATAAGTGAATTGAAGTCCCTCTTGATTATGAATGTTTCTGGCTGCTCAAGACTCCGTAGTTTTCCAGAAGGTTTAAAGAAAATCAAATCTTTAGAGGAACTTTTTGCAAATGAAACAGCCATTGAAGAACTACCTTCATCTGTTTTCTATCTGGAAAACCTCAAAGTTATGTCATTTTCTGGATGCAAAGGACCAGTTTCTAAGTCAGTGAATTCATTTTTTCGACCATTTACCGAGCTGTTAAGGAGTCCACAAGAACCTATTGGATTTCTATTACCACCTAAGTTGTGTCTACCTTCATTGAGGAATTTAAACTTAAGTTACTGCAATCTATCCGAAGAATCAATGCCAAAAGATTTTTCCAACTTATCTTCCTTGGTTGCTTTAGATCTCACTGGAAACAATTTTGTTAGGCCACCGAGTAGCATTTCGAAACTTCCAAAGCTTGAATATCTTAGCCTAAACTGTTGTGAAATGCTTGAGAAGTTTCCAGAATTTCCATCAAGTATGAGAGTATTGGATGCAAGTAATTGTGCTTCATTGGAAACTTCCAAATTCAATCTATCTATGCCATGCAGTCTCTTTGCATCTCTGACACAGCGACACTCGTATTTGCCTGTAGTAATGAAGAAATATTTCGAGGTACAGGCACAGGAACATGGTCTACCAAAAGCAAGATTCGACATGCTTATCACAGGGTATGAAATTCCATCATGGTTCACACCTTCAAAATATATTAAAGCTACAAATATGTCAGTCCCTCGTAATTGTCCTCCAACCGAATGGGTGGGATTCGCTTTGTGTTTCATGTTGGTAAATTTTGATGATGAACCTGAGATATGTAATCATGAAGTGAGTTGTTACTTGTTCGGACCGAAAGGCAAGCTGTTAATCACAACCAGGGATTTGCCTCCAATGGAACCGTATGTCCGTCACCTTTATATTCTCTATCTTACCATCGATGAATGCCGCGACAGATTTTTTGATGGCGGTGACTGCAGTGAAATTGAATTTGTCTTGAAAACTTATTGTTGCGATTCTTTGCAAGTGGTAGGGTGCGGTTGTCGCATTGTAAGTAAGCAAGATGTTGAAGATATGTACAATAACCATTACTAG 3423 0.3815 MAMASITTKDEASSSCSSSVQTSKWTNRVFLSFRGEDTRQGFTDHLFASLERRGIKTFKDDHDLQGGEVISVELNKAIQESMFAVIILSPNYASSSWCLDELQKIVECSKSFGQAVFPIFHGVDPSDVRHQRGSFEEAFRKHEQKLDRNKIERWRDALREVASYSGWDSKGWKEASLVETIAEHIHKKLIPKLPVCKDNLVDIDSRIEEIYSLLGMGLSDVRFIGIWGMGGIGKTTIARSVYDAIKAEFKVSCFLADIRETISKTDGLVHIQSELLSHLKIRGNDFYNVHDGKKILANSFNNRKVLLVLDDVSELSQLENLAGKQEWFGPGSRIIITSRDKHLLSTHGVHETYKAKGLVKNEALKLFCLRAFKQNQPGEEYLSLCKEVVKYARGLPLALEVLGSHFHGRTLEVWHSALEQMRNVPHSKIHDTLKISYDGLQSMEKNMFLDIACFFKGMDIDEVIEILEDCGYYPKIGIDVLIERSLVSFDRGDKKLWMHDLLEEMGKNIVYQESPNDPGKRSRLWSQKDIGQVLTKNKGTDKIQGIAMNLVQPYEASWNIEAFSKLSQLRLLKLCEIKLPRGLNCFPSSLKVLDWRGCPLKTLPLANPLDEIVNLRLYHSKIEQLWHGTQFLESLKFINLSFSKSLKRSPDFVGVPNLESLVLEGCTSLTDIHPSLLSHKKLILLNLKDCKRLKALPCKIEMSSLKGLTLSGCCEFNHLPEFDESMDNLFKLCLEETAIKKLPSSLGFLVSLVLLDLENCKNLTCLPDTISELKSLLIMNVSGCSRLRSFPEGLKKIKSLEELFANETAIEELPSSVFYLENLKVMSFSGCKGPVSKSVNSFFRPFTELLRSPQEPIGFLLPPKLCLPSLRNLNLSYCNLSEESMPKDFSNLSSLVALDLTGNNFVRPPSSISKLPKLEYLSLNCCEMLEKFPEFPSSMRVLDASNCASLETSKFNLSMPCSLFASLTQRHSYLPVVMKKYFEVQAQEHGLPKARFDMLITGYEIPSWFTPSKYIKATNMSVPRNCPPTEWVGFALCFMLVNFDDEPEICNHEVSCYLFGPKGKLLITTRDLPPMEPYVRHLYILYLTIDECRDRFFDGGDCSEIEFVLKTYCCDSLQVVGCGCRIVSKQDVEDMYNNHY 1140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00918 1140 SUPERFAMILY RNI-like 866 956 - -
Vifa4g00918 1140 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 28 721 IPR044974 GO:0006952
Vifa4g00918 1140 Gene3D - 24 188 IPR035897 -
Vifa4g00918 1140 Pfam TIR domain 29 195 IPR000157 GO:0007165
Vifa4g00918 1140 SMART till_3 26 164 IPR000157 GO:0007165
Vifa4g00918 1140 FunFam Disease resistance protein (TIR-NBS-LRR class) 23 191 - -
Vifa4g00918 1140 Pfam NB-ARC domain 207 440 IPR002182 GO:0043531
Vifa4g00918 1140 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 451 IPR027417 -
Vifa4g00918 1140 Gene3D Ribonuclease Inhibitor 548 850 IPR032675 -
Vifa4g00918 1140 PRINTS Disease resistance protein signature 392 406 - -
Vifa4g00918 1140 PRINTS Disease resistance protein signature 223 238 - -
Vifa4g00918 1140 PRINTS Disease resistance protein signature 299 313 - -
Vifa4g00918 1140 PRINTS Disease resistance protein signature 747 763 - -
Vifa4g00918 1140 Gene3D - 189 352 IPR027417 -
Vifa4g00918 1140 Gene3D - 358 441 IPR042197 -
Vifa4g00918 1140 Gene3D Ribonuclease Inhibitor 851 974 IPR032675 -
Vifa4g00918 1140 SUPERFAMILY L domain-like 511 832 - -
Vifa4g00918 1140 ProSiteProfiles TIR domain profile. 25 189 IPR000157 GO:0007165
Vifa4g00918 1140 SUPERFAMILY Toll/Interleukin receptor TIR domain 16 167 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00918 Vifa-Chr4 266296561 266300516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00918 22 863 WRKY Transcription Factor Family AT4G12020 31.555 1.38e-108 373
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00918 - - gmx:100815486 1557.35