Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00914 ATGGGAGGTTGCTGTTGTTCTGCCAGAAAAACGCATCTGCATGGAACTCCGGTGTATTACTATTGCCCACCAATTTTAGAAGAGCGCGATTCCTTAACCTCTAATGATGGTCCAACCGATTCTCTCACTGCTGGATTGCTGGTTGGCTTGAATGTGGAAGAATCCACACCTGATACTTACCAGCCTCCTCCTGCACCACTGCCTTATGATACAGTCTTGGGTGGTCCAGCATCGACAGAGTCCAAGTCAGGCAGAGACACAGTTAGTGGTAGTAGTATTAAAACTGCAGTTACATGTGAAGATATTGAAGAATCTGACTCTAAAGCTCAAGTTAAATCTGAACCATTATCCCCTAACAAGGCAGAACTGTGTAAATCAAATAAACCTCAAGCACTGGTAATAGAAGAAGAGGATGGCTGTCCAATCTGCCTTGAAGAATATGATGTTGAGAATCCTAAGACTCTTACAAAATGTGAACACCACTTTCACCTGGCTTGCATTCTTGAGTGGATGGAAAGAAGTGACTCCTGTCCTATATGTGACCAGGAAATGATATTTGATGAGGAACTTGACTAG 576 0.4323 MGGCCCSARKTHLHGTPVYYYCPPILEERDSLTSNDGPTDSLTAGLLVGLNVEESTPDTYQPPPAPLPYDTVLGGPASTESKSGRDTVSGSSIKTAVTCEDIEESDSKAQVKSEPLSPNKAELCKSNKPQALVIEEEDGCPICLEEYDVENPKTLTKCEHHFHLACILEWMERSDSCPICDQEMIFDEELD 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00914 191 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 133 190 IPR013083 -
Vifa4g00914 191 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 39 188 - -
Vifa4g00914 191 Pfam Ring finger domain 140 180 IPR001841 -
Vifa4g00914 191 SUPERFAMILY RING/U-box 131 187 - -
Vifa4g00914 191 MobiDBLite consensus disorder prediction 54 92 - -
Vifa4g00914 191 FunFam Putative E3 ubiquitin-protein ligase RHB1A 116 185 - -
Vifa4g00914 191 MobiDBLite consensus disorder prediction 76 92 - -
Vifa4g00914 191 SMART ring_2 140 180 IPR001841 -
Vifa4g00914 191 ProSiteProfiles Zinc finger RING-type profile. 140 181 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00914 Vifa-Chr4 264827422 264832870 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00914 1 191 C3H Transcription Factor Family AT4G00335 55.497 1.05e-71 213
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00914 - - tpra:123885727 335.109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01550 5 451627321 451628415 Vifa4g00914 4 264827422 264832870 PCT