Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00913 ATGTCACTCCTTTCCCTTTTCTTCCTACTACTCTTCCTTAACTTCACTCTTTTCACTTCTTCAACTTCCCCCAACAACAACAACAACTCAAATGTAATAGTTTTATCAGGAAACCAAACCCTCCTCAGCCAAAACAAAACCTTCGAACTCGGTTTCTTCAACTTAGAACAATCCCAACTAAACCAACCTCGTATTTACCTCCTTATCCGTTTCACTTCTCTCCCTTCCCCAAACATCACATGGCTCGCGAACCGTAACAAACCCTCCCCATCTCTCTCCGGTTCATCTCTCCAATTAACCCGAACCGGTCAATTACTCATCACTCACAACGACACCGTTTTATGGCAAACAAACACCACCACACAGCAAACTCTTCAACCGAACCTTCTAGAAAACGGTAACTTAATCCTCACAACCCTCAACGGCGTCGTTTCGTGGCAAAGCTTCGACGAACCCACCGACACGTGGCTTCCTGGTATGAACCTCACTAGGGTTCACAGCCTTCTCTCATGGCGGACGGTAACTAACCCCGGTGACGGATTTTATTCTCTGCGGTTGAATCCACCGTTCTACGGTCAATTCGAGCTTGTTTACAACGGCACCGTTTCGTATTGGGCCACCGGTGACTGGACTGGAAAGAAATTTAGCAATGTTCCTGAGATGGATATTCCTTATCTCTACCGATTCAATTTCGAAGACGCGTATTCTCCGCAAGCGTCGTTTGGATTCTCTGAACGAGCTATTGATAATGATGTTGGGCCTCCTACCATGTTCCGTGTTGAACCCACTGGTCTCGTTCGCCAGTTCGCGTGGTCGAGTCAAGCTGGTGCGTGGAACATGTTTTGGTCTAGACCTGAATCGGTTTGTTCGGTTCCGCGTGTTTGTGGGAGGTTTGGTGTTTGTATGGCCGAGGTGCCCTTGAGTTGTGAGTGTGTTAAGGGTTTTGTCGCGGTTGATAGTGCTGGTTGGGGGGCTGGTGATTATTCTCAAGGTTGTTGGCGTGGGGAGAGTGGTTGTGATCATAGTGACACTTTTGAAGATTTGGGTGCTCTTAAGTTTGGTTTTGATAATGTGACTAGTTTTAGGGCTAAATCTAGAAGATTATGTAAGCGTCATTGTTTGGATTCTTGTGATTGTGTTGGTTTGTCTTTTGATGAAGAGAGTGGTTTTTGTAGGAATTATTTTGGATCTCTTTTTGATTTTCATAATTTAACTTCTTTGGGGAATGTGTTGTATGTTAAGGTGAGTAAGGGGAAGATCAAGAGGTTGAGTGGTGGGTTTTTGAGTGGTGTTGTTATTGGGTGTGTTTTGTTTTTGGTTTTGATTTTGGGTGTTGTGACGGTGACTTTGGTGGTGTTGACAAAGAGGAACAGATCGAAGAAGAAGGAGATGGGTTTGGAGGAAGATGGGTTTGTTCAAATGTTGAATTTGAAGGTGTTTTCTTACAAAGAGCTTCAATTGGCAACTCGAGGGTTTTCTGAAAAAGTTGGGCATGGTGGGTTTGGGACTGTGTTTCAAGGCGAGTTGAGTGATTCTACAGTTGTTGCAGTGAAGCGTTTGGAGAGGCCGGGAGGTGGGGAGAAAGAGTTTAGGGCCGAGGTTTCAACGATTGGGAACATTCAGCATATTAATCTTGTGAGGCTAAGAGGTTTTTGCTCTGAGAATGCACATCGACTTTTGGTTTATGAGTACATGCCGAATGGTGCCCTCAGTGCTTACCTGCGTAAGGAAGGGCCGTGTTTGAGCTGGGATGTTAGATTTAGGGTAGCAATTGGAACTGCTAAAGGGATAGCGTATTTACACGAGGAATGTAGAAGTTGCATAATACATTGTGATATCAAACCTGAAAACATTCTTTTGGATAGTGATTTCACTGCCAAAGTTTCTGATTTTGGGTTGGCAAAGCTCATTGGCCGGGACTTCAGTAGGGTGTTGGCAACCATGAGGGGTACTTGGGGATATGTAGCACCTGAGTGGATTTCCGGTGTTGAAATTACAACAAAAGCTGATGTTTACAGCTACGGAATGACATTGCTAGAACTCCTAGGCGGTCGCCGGAATGTTGAGGCACCTCCTTCGTCTGGTGATAGAAAGAGTGGTTGCGAGACAGGAGAGAAATGGTTCTTTCCTCCATGGGCGGCACAGCTGATAATCGACAATAATGTAGCTGCTGTGGTTGATAAGAAGCTTGGAAATGTATATAACATTGAGGAGGCTAAAAGGGTTGCTTTGGTGGCAGTTTGGTGCATTCAAGATGACGAGGCCGTGAGACCTAGTATGGGTATGGTGGTGAAAATGTTAGAAGGGTTAGTGGATGTGGCTCTTCCACCGCCTCCTAAGTTGCTACAAGCCTTGGTTACCGGAGAGTCCTTTCACGGGGTCAAGGTTTATTCGAGTAATGCAGTTTCTACGGCTGGCAGTTCATTTGGTGACGACAACATGGAAGTGTCGGCTGCTGATTCCGAATCTTGTATAGGAGATGTTTTTTCCCCATTGGACGGCATTGTCAATGTTCGATAG 2520 0.4536 MSLLSLFFLLLFLNFTLFTSSTSPNNNNNSNVIVLSGNQTLLSQNKTFELGFFNLEQSQLNQPRIYLLIRFTSLPSPNITWLANRNKPSPSLSGSSLQLTRTGQLLITHNDTVLWQTNTTTQQTLQPNLLENGNLILTTLNGVVSWQSFDEPTDTWLPGMNLTRVHSLLSWRTVTNPGDGFYSLRLNPPFYGQFELVYNGTVSYWATGDWTGKKFSNVPEMDIPYLYRFNFEDAYSPQASFGFSERAIDNDVGPPTMFRVEPTGLVRQFAWSSQAGAWNMFWSRPESVCSVPRVCGRFGVCMAEVPLSCECVKGFVAVDSAGWGAGDYSQGCWRGESGCDHSDTFEDLGALKFGFDNVTSFRAKSRRLCKRHCLDSCDCVGLSFDEESGFCRNYFGSLFDFHNLTSLGNVLYVKVSKGKIKRLSGGFLSGVVIGCVLFLVLILGVVTVTLVVLTKRNRSKKKEMGLEEDGFVQMLNLKVFSYKELQLATRGFSEKVGHGGFGTVFQGELSDSTVVAVKRLERPGGGEKEFRAEVSTIGNIQHINLVRLRGFCSENAHRLLVYEYMPNGALSAYLRKEGPCLSWDVRFRVAIGTAKGIAYLHEECRSCIIHCDIKPENILLDSDFTAKVSDFGLAKLIGRDFSRVLATMRGTWGYVAPEWISGVEITTKADVYSYGMTLLELLGGRRNVEAPPSSGDRKSGCETGEKWFFPPWAAQLIIDNNVAAVVDKKLGNVYNIEEAKRVALVAVWCIQDDEAVRPSMGMVVKMLEGLVDVALPPPPKLLQALVTGESFHGVKVYSSNAVSTAGSSFGDDNMEVSAADSESCIGDVFSPLDGIVNVR 839
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00913 839 SUPERFAMILY Protein kinase-like (PK-like) 474 768 IPR011009 -
Vifa4g00913 839 ProSiteProfiles PAN/Apple domain profile. 339 417 IPR003609 -
Vifa4g00913 839 ProSitePatterns Protein kinases ATP-binding region signature. 496 518 IPR017441 GO:0005524
Vifa4g00913 839 ProSiteProfiles Protein kinase domain profile. 490 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00913 839 Gene3D - 25 149 IPR036426 -
Vifa4g00913 839 SMART serkin_6 490 771 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00913 839 SUPERFAMILY alpha-D-mannose-specific plant lectins 65 210 IPR036426 -
Vifa4g00913 839 Pfam D-mannose binding lectin 79 164 IPR001480 -
Vifa4g00913 839 PANTHER OS07G0415500 PROTEIN 6 780 - -
Vifa4g00913 839 FunFam S-receptor-like kinase 5 565 776 - -
Vifa4g00913 839 Gene3D Phosphorylase Kinase; domain 1 462 564 - -
Vifa4g00913 839 CDD STKc_IRAK 496 770 - -
Vifa4g00913 839 PIRSF SRK 1 821 IPR024171 GO:0004674
Vifa4g00913 839 FunFam Receptor-like protein kinase 4 451 564 - -
Vifa4g00913 839 ProSitePatterns Serine/Threonine protein kinases active-site signature. 608 620 IPR008271 GO:0004672|GO:0006468
Vifa4g00913 839 Gene3D Transferase(Phosphotransferase) domain 1 565 774 - -
Vifa4g00913 839 SMART blect_4 32 152 IPR001480 -
Vifa4g00913 839 ProSiteProfiles Bulb-type lectin domain profile. 26 150 IPR001480 -
Vifa4g00913 839 Pfam Protein kinase domain 493 764 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00913 839 Pfam S-locus glycoprotein domain 205 317 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00913 Vifa-Chr4 264362257 264364776 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00913 441 777 Receptor kinase-like Gene Family AT5G20050 42.936 4.25e-81 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Vifa4g00913 Pkinase 9.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00913 - - lja:Lj0g3v0252549.1 1140.18