Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00910 ATGCTTGACGACGGACGGAAGGTTGATTTGTTTAAGCTGTTTAACGCGGTTAAGGGTAAAGGCGGGTACGAGGTTGTTTGCGATCGAGAGTTGTGGGATTCGGTTGGGGAAGAATGTGGGTTGGGTGTGAATGATGGTTTGTCTGTGAAACGGGTTTATACTGAGTACAAGAGTGTTTTGGAGGGGTGTCTTGAGAAACTTTGTTCTGGTAAGGTGTCGTATGAGAGTGTTTTGATGGAATCGTTGGCTGAGGTGAAAGCGTTGTTGTCTGATCAGACGGAGAATGTGGGGGTTGGAAATGAGGTTAAGGGTGAAACCGATGTTGCGAAGAATGTGGTGAAGAGTGGTGAGTCTGGATTGTTGAATGGCGAGGGTAGTAATGGTGATCTCGATGATGTTATTATCATTGACTCAGATTCATCTAGCGGTAGTGGAAGAGTTTCTGGATTGAAGAGGAAGAGAGAAGAGTCTTTGTCTGATATGATGAGTTGGGTTACTCGTGTTGCGAGTAACCCTTGTGATCCTGAAATTGGTGACATGCCTGAAAAGTCGAAGTGGAATTCTTACAATAATCAGGAGGCTTGGAAGCAGGTTTTGTTGTTTCGAGAGGCTGCGTTTCACAAGAAACCGGCAAGCATTGAAAAGCTGAATTGGCAGAATCAGAAGATGCATCCTTGCTTGTACGATGATGCCGCTGCGACAGCCTACAATCTAAGGGAGAGGCTGAAACATGACAAAAAACTGTTGGTTGAAAAACCAAGATCAGCTTCACAAAGCTCATCAAATTCATCCTCTGACGAACGTGTTGCGAAACATTTGCGTGATTCCGCGAGTACCCCTTCGAGTTATGAGATATGGGCTGATGCATGCATCTGTGTGGGGGAAAGTTATCAAGCTCGACTGCCAGAGTGGACTGGTAATGCTTACGAAAGTGATCCTAAGTGGTTTGGGACCCAAGTGTGGCCAACGTTGGAACCAGTTGATTCTCGATTTCTTATTGAAAGGGATCCTATAGGAAAAGGAAGACAAGAATCATGTGGCTGCGCTGTGTCGGGTTCTATTGACTGTGTCAGATTTCACATTTCTGAGAGAAAGGCTAAAATGAAGCTGGAGTTAGGTGCGGCTTATTACCAATGGCAATTTGATAAGGTCGGTGAAGATGTTCGACACTTGTGGACGGATGAAGATGAGAGAAAATTCACTGAAGTGATACAGTCAAACCCTCCATCATCTGCGAGACATTTCTGGGATCATATTTTTCGCGCATTTCCTAATAAGAGCAGCGCAGCTTTAGTCAGCTACTACTTCAATGTCTATCTTTTGCAGCGCAGAGCATACCACAGCAGGCACACAGCTGATGACATTGTCAGCGATGATGAAGAATCAGTACGCAAATTGAAGAGTGTTTTCGGCCATCAGAAATCGCGTGACTCCGTCTTTCTGTCCCCCAAGAAGCGGCACAGAAAGAGGAGATAG 1476 0.4533 MLDDGRKVDLFKLFNAVKGKGGYEVVCDRELWDSVGEECGLGVNDGLSVKRVYTEYKSVLEGCLEKLCSGKVSYESVLMESLAEVKALLSDQTENVGVGNEVKGETDVAKNVVKSGESGLLNGEGSNGDLDDVIIIDSDSSSGSGRVSGLKRKREESLSDMMSWVTRVASNPCDPEIGDMPEKSKWNSYNNQEAWKQVLLFREAAFHKKPASIEKLNWQNQKMHPCLYDDAAATAYNLRERLKHDKKLLVEKPRSASQSSSNSSSDERVAKHLRDSASTPSSYEIWADACICVGESYQARLPEWTGNAYESDPKWFGTQVWPTLEPVDSRFLIERDPIGKGRQESCGCAVSGSIDCVRFHISERKAKMKLELGAAYYQWQFDKVGEDVRHLWTDEDERKFTEVIQSNPPSSARHFWDHIFRAFPNKSSAALVSYYFNVYLLQRRAYHSRHTADDIVSDDEESVRKLKSVFGHQKSRDSVFLSPKKRHRKRR 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00910 491 CDD SANT 392 438 IPR001005 -
Vifa4g00910 491 MobiDBLite consensus disorder prediction 468 491 - -
Vifa4g00910 491 SUPERFAMILY ARID-like 4 56 IPR036431 GO:0003677
Vifa4g00910 491 Pfam ARID/BRIGHT DNA binding domain 4 56 IPR001606 GO:0003677
Vifa4g00910 491 MobiDBLite consensus disorder prediction 247 273 - -
Vifa4g00910 491 ProSiteProfiles ARID domain profile. 1 65 IPR001606 GO:0003677
Vifa4g00910 491 CDD ARID 4 56 - -
Vifa4g00910 491 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 487 - -
Vifa4g00910 491 SMART ELM2_2 291 343 IPR000949 -
Vifa4g00910 491 Gene3D - 2 67 IPR036431 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00910 Vifa-Chr4 263586896 263589115 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Vifa4g00910 ARID 3.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00910 - - psat:127075971 815.453