Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00891 ATGACAGATCCTCAATCAAACTTTTTTGATGAATGGTTCAATTTCATGCTCCACCACACTAATCATCATCATCATCATCCCTACTCCTCTTCTTCTTCTCATCAACCATCCTCCTCCTCCTCCACCACAATTAATCCACCATCTTCTCCTCCTCTTAGAGAAGCTCTTCCTCTCATTAACAAGTTAAGCCTCATAAATGATCAACAAAATGAACCCTCAAACTCAAACTCAAACTCAAACATCATTAATCCCACCATAGTACAAAATGAATACAATCATCATCATGATCATGTTGATGATGATGAAAGTGTTACTGTTGCCCTACAAATAGGGCTTCCTAGAATGAATAGTAACTCTTCTGATCTTGGATCAAAGATGTGCTCATCAAATTGTATAGAAATGGCTGAAAAATATGAAGTTAATATGATTTCTGAAAACCCTTTGGAAAAATTGAACAAGGGTCAGTATTGGATTCCTACTCCTTCTCAAATTCTCATTGGTCCTACACAATTCTCATGTCCTGTCTGCTCTAAAACTTTCAACAGATACAACAACCTTCAGATGCATATGTGGGGACATGGATCTCAATACAGAAAAGGACCAGATTCTCTAAAAGGAACACAACCAACAGCAATGTTAAGGCTTCCATGCTACTGTTGTGCACCAGGTTGCAAGCACAACATTGATCACCCTAGAGCAAAGCCTCTCAAAGATTTTAGAACACTTCAAACACACTATAAGAGAAAGCATGGTATAAAACCTTACATGTGTAGAAAATGTGGGAAATCATTTGCAGTGAAAGGTGATTGGAGAACACATGAGAAGAATTGTGGCAAAATTTGGTATTGTTTATGTGGTTCGGATTTCAAACATAAAAGGTCGCTTAAAGATCATATTAAAGCCTTTGGTTATGGTCATGGTGCTTTTGGTATTGATTGCTTGCAAGAAGAAGATGAAGTTGGTTCAGAAATTGAACATGATGGTGGAAGTTCAATGTGA 999 0.3744 MTDPQSNFFDEWFNFMLHHTNHHHHHPYSSSSSHQPSSSSSTTINPPSSPPLREALPLINKLSLINDQQNEPSNSNSNSNIINPTIVQNEYNHHHDHVDDDESVTVALQIGLPRMNSNSSDLGSKMCSSNCIEMAEKYEVNMISENPLEKLNKGQYWIPTPSQILIGPTQFSCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGTQPTAMLRLPCYCCAPGCKHNIDHPRAKPLKDFRTLQTHYKRKHGIKPYMCRKCGKSFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGYGHGAFGIDCLQEEDEVGSEIEHDGGSSM 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00891 332 PANTHER ZINC FINGER PROTEIN WIP2 13 324 IPR043584 GO:0003700|GO:0010468
Vifa4g00891 332 Pfam Zinc finger, C2H2 type 171 190 IPR013087 -
Vifa4g00891 332 MobiDBLite consensus disorder prediction 23 53 - -
Vifa4g00891 332 FunFam zinc finger protein WIP2-like 170 193 - -
Vifa4g00891 332 ProSitePatterns Zinc finger C2H2 type domain signature. 173 193 IPR013087 -
Vifa4g00891 332 Gene3D Classic Zinc Finger 233 304 - -
Vifa4g00891 332 Gene3D Classic Zinc Finger 170 193 - -
Vifa4g00891 332 MobiDBLite consensus disorder prediction 30 49 - -
Vifa4g00891 332 ProSiteProfiles Zinc finger C2H2 type domain profile. 255 275 IPR013087 -
Vifa4g00891 332 SMART c2h2final6 255 275 IPR013087 -
Vifa4g00891 332 SMART c2h2final6 171 193 IPR013087 -
Vifa4g00891 332 ProSiteProfiles Zinc finger C2H2 type domain profile. 171 198 IPR013087 -
Vifa4g00891 332 FunFam Zinc finger protein WIP2 224 306 - -
Vifa4g00891 332 SUPERFAMILY beta-beta-alpha zinc fingers 8 193 IPR036236 -
Vifa4g00891 332 SUPERFAMILY beta-beta-alpha zinc fingers 237 275 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00891 Vifa-Chr4 257902876 257905498 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00891 1 325 C2H2 Transcription Factor Family AT3G57670 55.091 3.13e-125 362
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa4g00891 zf-C2H2 0.00057 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00891 - - gmx:100794446 494.967