Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00888 ATGAATGATGGTAGACAAATGGGGGTGCATTATATGGATGGTGGTGGTTTTCCTTATGCTGTTAATGAGAACTTTGTGGATTTCTTTCAAGGGATTAATCATGTTCCTGTCAATTATGGATTTCCTGGCTCAATGCCTGATCAGGATAATGTCTACTGGTCAATGAACATGAGTCCCTATAAGTTTGGAATGTCTGGCCCTGGAAGTACATCTTATTATAGTTCTTATGAGGTAAATGATCATTTGCCAAGAATGGAGAACAACAGGGTCGAGTGGGAATACCCTTCTGAAGTGATCTCTGAGGAACCAGCTTCATCAGATTCTCCGCCTAGAAGAGATGGAGTTAGCATGCAGACTATCCCTGAAGAATGTAGTCCCAATCATCAAGAGTCCAGTAGTAGCCAGGTCATATGGCAAGACAACATTGATCCTGACAATATGACTTATGAGGAACTTCTGGACCTAGGGGAAGCAGTTGGAACTCAAAGCCGAGGTCTTTCCCAAGAACTTATTGATACACTTCCAACCTCGAAATACAAATTTGGTAGCTTATTCAAAAGAAAAAATTCTGGAAAAAGGTGTGTAATTTGCCAGATGACATACAGAAGAGGCGACCAGCAAATGAAATTGCCATGCAGCCATGTTTATCACGGCGAATGCATTACCAAATGGCTTAGCATTAACAAGAAATGTCCTGTCTGCAACACTGAGGTTTTTGGCGAGGAATCAACACAGTAG 738 0.416 MNDGRQMGVHYMDGGGFPYAVNENFVDFFQGINHVPVNYGFPGSMPDQDNVYWSMNMSPYKFGMSGPGSTSYYSSYEVNDHLPRMENNRVEWEYPSEVISEEPASSDSPPRRDGVSMQTIPEECSPNHQESSSSQVIWQDNIDPDNMTYEELLDLGEAVGTQSRGLSQELIDTLPTSKYKFGSLFKRKNSGKRCVICQMTYRRGDQQMKLPCSHVYHGECITKWLSINKKCPVCNTEVFGEESTQ 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00888 245 FunFam E3 ubiquitin ligase BIG BROTHER 156 239 - -
Vifa4g00888 245 SMART ring_2 194 234 IPR001841 -
Vifa4g00888 245 MobiDBLite consensus disorder prediction 98 136 - -
Vifa4g00888 245 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 241 IPR033276 GO:0004842|GO:0016567|GO:0046621
Vifa4g00888 245 MobiDBLite consensus disorder prediction 120 136 - -
Vifa4g00888 245 ProSiteProfiles Zinc finger RING-type profile. 194 235 IPR001841 -
Vifa4g00888 245 Pfam Ring finger domain 193 235 IPR001841 -
Vifa4g00888 245 SUPERFAMILY RING/U-box 193 239 - -
Vifa4g00888 245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 156 239 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00888 Vifa-Chr4 254639458 254643383 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00888 9 245 C3H Transcription Factor Family AT3G63530 54.812 7.62e-95 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00888 K19045 - gmx:100792734 444.506