Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa4g00888 | ATGAATGATGGTAGACAAATGGGGGTGCATTATATGGATGGTGGTGGTTTTCCTTATGCTGTTAATGAGAACTTTGTGGATTTCTTTCAAGGGATTAATCATGTTCCTGTCAATTATGGATTTCCTGGCTCAATGCCTGATCAGGATAATGTCTACTGGTCAATGAACATGAGTCCCTATAAGTTTGGAATGTCTGGCCCTGGAAGTACATCTTATTATAGTTCTTATGAGGTAAATGATCATTTGCCAAGAATGGAGAACAACAGGGTCGAGTGGGAATACCCTTCTGAAGTGATCTCTGAGGAACCAGCTTCATCAGATTCTCCGCCTAGAAGAGATGGAGTTAGCATGCAGACTATCCCTGAAGAATGTAGTCCCAATCATCAAGAGTCCAGTAGTAGCCAGGTCATATGGCAAGACAACATTGATCCTGACAATATGACTTATGAGGAACTTCTGGACCTAGGGGAAGCAGTTGGAACTCAAAGCCGAGGTCTTTCCCAAGAACTTATTGATACACTTCCAACCTCGAAATACAAATTTGGTAGCTTATTCAAAAGAAAAAATTCTGGAAAAAGGTGTGTAATTTGCCAGATGACATACAGAAGAGGCGACCAGCAAATGAAATTGCCATGCAGCCATGTTTATCACGGCGAATGCATTACCAAATGGCTTAGCATTAACAAGAAATGTCCTGTCTGCAACACTGAGGTTTTTGGCGAGGAATCAACACAGTAG | 738 | 0.416 | MNDGRQMGVHYMDGGGFPYAVNENFVDFFQGINHVPVNYGFPGSMPDQDNVYWSMNMSPYKFGMSGPGSTSYYSSYEVNDHLPRMENNRVEWEYPSEVISEEPASSDSPPRRDGVSMQTIPEECSPNHQESSSSQVIWQDNIDPDNMTYEELLDLGEAVGTQSRGLSQELIDTLPTSKYKFGSLFKRKNSGKRCVICQMTYRRGDQQMKLPCSHVYHGECITKWLSINKKCPVCNTEVFGEESTQ | 245 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa4g00888 | 245 | FunFam | E3 ubiquitin ligase BIG BROTHER | 156 | 239 | - | - | |
Vifa4g00888 | 245 | SMART | ring_2 | 194 | 234 | IPR001841 | - | |
Vifa4g00888 | 245 | MobiDBLite | consensus disorder prediction | 98 | 136 | - | - | |
Vifa4g00888 | 245 | PANTHER | RING/U-BOX SUPERFAMILY PROTEIN | 5 | 241 | IPR033276 | GO:0004842|GO:0016567|GO:0046621 | |
Vifa4g00888 | 245 | MobiDBLite | consensus disorder prediction | 120 | 136 | - | - | |
Vifa4g00888 | 245 | ProSiteProfiles | Zinc finger RING-type profile. | 194 | 235 | IPR001841 | - | |
Vifa4g00888 | 245 | Pfam | Ring finger domain | 193 | 235 | IPR001841 | - | |
Vifa4g00888 | 245 | SUPERFAMILY | RING/U-box | 193 | 239 | - | - | |
Vifa4g00888 | 245 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 156 | 239 | IPR013083 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vifa4g00888 | Vifa-Chr4 | 254639458 | 254643383 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa4g00888 | 9 | 245 | C3H Transcription Factor Family | AT3G63530 | 54.812 | 7.62e-95 | 276 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa4g00888 | K19045 | - | gmx:100792734 | 444.506 |