Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00887 ATGAATGATGGTAGACAAATGGGGGTGCATTATATGGATGGTGGTGGTTTTCCTTATGCTGTTAATGAGAACTTTGTGGATTTCTTTCAAGGGATTAATCATGTTCCTGTCAATTATGGATTTCCTGGCTCAATGCCTGATCAGGATAATGTCTACTGGTCAATGAACATGAGTCCCTATAAGTTTGGAATGTCTGGCCCTGGAAGTACATCTTATTATAGTTCTTATGAGGTAAATGATCATTTGCCAAGAATGGAGAACAACAGGGTCGAGTGGGAATACCCTTCTGAAGTGATCTCTGAGGAACCAGCTTCATCAGATTCTCCGCCTAGAAGAGATGGAGTTAGCATGCAGACTATCCCTGAAGAATGTAGTCCCAATCATCAAGAGTCCAGTAGTAGCCAGGTCATATGGCAAGACAACATTGATCCTGACAATATGACTTATGAGGTGCAGGAACTTCTGGACCTAGGGGAAGCAGTTGGAACTCAAAGCCGAGGTCTTTCCCAAGAACTTATTGATACACTTCCAACCTCGAAATACAAATTTGGTAGCTTATTCAAAAGAAAAAATTCTGGAAAAAGGTGTGTAATTTGCCAGATGACATACAGAAGAGGCGACCAGCAAATGAAATTGCCATGCAGCCATGTTTATCACGGCGAATGCATTACCAAATGGCTTAGCATTAACAAGAAATGTCCTGTCTGCAACACTGAGGTTTTTGGCGAGGAATCAACACAGTAG 744 0.418 MNDGRQMGVHYMDGGGFPYAVNENFVDFFQGINHVPVNYGFPGSMPDQDNVYWSMNMSPYKFGMSGPGSTSYYSSYEVNDHLPRMENNRVEWEYPSEVISEEPASSDSPPRRDGVSMQTIPEECSPNHQESSSSQVIWQDNIDPDNMTYEVQELLDLGEAVGTQSRGLSQELIDTLPTSKYKFGSLFKRKNSGKRCVICQMTYRRGDQQMKLPCSHVYHGECITKWLSINKKCPVCNTEVFGEESTQ 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00887 247 SUPERFAMILY RING/U-box 195 241 - -
Vifa4g00887 247 SMART ring_2 196 236 IPR001841 -
Vifa4g00887 247 MobiDBLite consensus disorder prediction 120 135 - -
Vifa4g00887 247 FunFam E3 ubiquitin ligase BIG BROTHER 158 241 - -
Vifa4g00887 247 Pfam Ring finger domain 195 237 IPR001841 -
Vifa4g00887 247 MobiDBLite consensus disorder prediction 98 135 - -
Vifa4g00887 247 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 5 243 IPR033276 GO:0004842|GO:0016567|GO:0046621
Vifa4g00887 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 241 IPR013083 -
Vifa4g00887 247 ProSiteProfiles Zinc finger RING-type profile. 196 237 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00887 Vifa-Chr4 254639458 254643383 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00887 9 247 C3H Transcription Factor Family AT3G63530 54.357 5.95e-93 272
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00887 K19045 - gmx:100792734 439.499