Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00886 ATGGGGAAGATAGAAAAAAAACACACCAAAATAAAATTTTCATTACCAAAACAAAATAATTTTCTATCACCCATGATGCATATCCTCCTGGTCATTCTTCTCTTATCTTTCTTGTCTTGGCCGTCTTTAGCTCTTCCTTCTCCCGCAAGTTTCCTTCCCAAGGACAATTTTCTCATTGATTGCGGTGCTGAAAATCCACCTACTTTACCTGATGGAAGACAGTTCAAATCAGATCCACAAGCGAATTCGTTCTTAAAGGCGACAGATGATTACAAAGTTTCTGTGAATGATGTTGATGTTCCTTTACCTATATACTTAAACGCTAGAATCTTCATTCAAGAAGCTAAGTATTCTTTCCATTTGGTTCAATCTGGTTTCCATTGGGTTCGGCTTCATTTCTACCCGATTAAAAACAGTGTTTTCGATCTTCAAAAGGCCACGTTTTCTGTCAACACAGATACTTTTGTTCTTCTTCATAGCTTCAATGTTAACAACACTGATAAAGCTATCCTCAAGGAGTATCTTATCAATGTAACAGACCCGCAGTTTACGTTGTCTTTTATTCCTTTGAAGAATTCGGCTGCGTTTATCAATGCAATCGAGGTTGTTTCGGCTCCTGATAACCTAATGTTCGATAGCGGGGCCGGACTTTTCCCGGTCGCTGAGGTTACTGGTTTGACACAATATGCTTTTCAGCCTGTTTATAGATTGAACAATGGAGGACCTCTTATTACATCATCGAATGATACACTAGGAAGAACATGGGAATCTGATGAGCCTTATCTTACAAACAAGAATCTTGCAAAGTTTGTTTCTGTTGCTACTAATGTTATTAAGTTTCCTCAAGACACGCCCACCATTTCGCCTTTGACTGCTCCGCAGACGATTTATGCTTCTGCAACTGAGATGGGTGATGCTGGTGTTAATCTACCAAATTTCAATGTTTCATGGAAGTTTGATGTTGACACTTCTTTTAGTTACCTTGTTAGGTTGCATTTTTGTGACATTGTGAGTAAAGGCCTTAATCAACTTTACTTCAATGTTTATGTTAATGGAAAAATTGCAATCCCTAATTTGGATTTATCCGCGATCACCGGTGCGTTGGCCACACCTTATTATAAGGATATTGTTGTGAATGCGACATTGATGACTCAAGGTTTGAGTGTTCAAGTTGGTCCTGCAAATGCTGATGGTGGAAATGCAAATGCATTGATGAATGGTATTGAGGTTTTGAAGATAAGCAACACAGTGAATAGTTTGGATGGTGAGTTTGGTGTTGATGGAAGGAGAGTTGGAGGATCGAACCGAGGAGCGGTTGCGGCCGTTGGTTTTGCTATGATGTTTGGTGCATTTGTTGGTCTTGGGGCTATGGTGATCAAGTGGCATAAGAGGCCACAAGATTGGCAAAAGAGGAATAGTTTCTCATCATGGTTGCTTCCTTTACACGCCGGTGACACCAGTTTCATGAGTAGCAAGAATTCAATGGGGAAGAGCAACATTTTCTCATCATCGATGGGATTAGGAAGGATTTTCTCCTTTCATGAAATACAAGAAGCAACTAAGAACTTTGACGCCAAGAACATCATCGGTGTTGGTGGATTTGGTAATGTTTATCTCGGTGTCATCGATGAAGGGACTCAAGTTGCGGTTAAGAGAGGAAATCCACAATCAGAACAAGGTATCAATGAATTCCAAACTGAAATCCAAATGCTGTCTAAGCTTAGACATAGACATTTGGTTTCTATGATTGGATATTGCGACGAAAACGAAGAAATGATATTGGTTTATGAGTACATGCCTAATGGACATTTGAGGGATCATCTTTATGGAAAGAACATGCCAGCACTTTCTTGGAAACAAAGGCTAGAGATTTGCATTGGATCCGCCAGAGGTCTTCATTACCTTCACACTGGTACAGCACAAGGAATCATTCATCGCGACGTCAAGACAACAAACATTTTACTCGACGAAAACTTCACGGCTAAGGTATCTGATTTTGGACTTTCAAAAGACGCACCTATGGGACAAGGTCACGTTAGTACCGCCGTGAAAGGTAGTTTCGGTTATCTTGATCCCGAGTACTTCAGGAGACAACAACTAACCGAAAAGTCTGATGTCTACTCGTTCGGAGTAGTCCTACTCGAGGCATTATGCGCTAGGCCGGCTATTAACCCTCAGTTGCCTAGAGAGCAAGTTAACTTAGCTGACTGGGCTATGCAATGGAAGAGAAAGGGTTTGATCGATAAAATCATCGACCCTCTTCTCGTTGGCTCGATTAACCCCGAGTCAATGAAGAAATTCGCTGAGGCGGCCGAGAAATGTTTAGCCGATCACGGTGTAGACAGGCCTTCGATGGGAGATGTTCTTTGGAACCTCGAATACGCGTTGCAACTTCAAGAAGCTTTCACACAAGGAAAAGCTGAGGATGAGAATTCTGCTGCTGCTGTTGCTGTTCCAACTTCACCTGCTCCTGCTCTTCCTACTACTACACCTCCCACTATTCCTGAAGATACCCCCACCATACCTAGTCCTACAATTCCTCAGCAAGAAGCAAACACCAACAATAATGGTGCTTCCGAAGCGCGTGCTATTGACGATCATTCAGGAACTGCAATGTTTGCACAGTTTAGTAATCTTAATGGAAGGTGA 2649 0.4171 MGKIEKKHTKIKFSLPKQNNFLSPMMHILLVILLLSFLSWPSLALPSPASFLPKDNFLIDCGAENPPTLPDGRQFKSDPQANSFLKATDDYKVSVNDVDVPLPIYLNARIFIQEAKYSFHLVQSGFHWVRLHFYPIKNSVFDLQKATFSVNTDTFVLLHSFNVNNTDKAILKEYLINVTDPQFTLSFIPLKNSAAFINAIEVVSAPDNLMFDSGAGLFPVAEVTGLTQYAFQPVYRLNNGGPLITSSNDTLGRTWESDEPYLTNKNLAKFVSVATNVIKFPQDTPTISPLTAPQTIYASATEMGDAGVNLPNFNVSWKFDVDTSFSYLVRLHFCDIVSKGLNQLYFNVYVNGKIAIPNLDLSAITGALATPYYKDIVVNATLMTQGLSVQVGPANADGGNANALMNGIEVLKISNTVNSLDGEFGVDGRRVGGSNRGAVAAVGFAMMFGAFVGLGAMVIKWHKRPQDWQKRNSFSSWLLPLHAGDTSFMSSKNSMGKSNIFSSSMGLGRIFSFHEIQEATKNFDAKNIIGVGGFGNVYLGVIDEGTQVAVKRGNPQSEQGINEFQTEIQMLSKLRHRHLVSMIGYCDENEEMILVYEYMPNGHLRDHLYGKNMPALSWKQRLEICIGSARGLHYLHTGTAQGIIHRDVKTTNILLDENFTAKVSDFGLSKDAPMGQGHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLLEALCARPAINPQLPREQVNLADWAMQWKRKGLIDKIIDPLLVGSINPESMKKFAEAAEKCLADHGVDRPSMGDVLWNLEYALQLQEAFTQGKAEDENSAAAVAVPTSPAPALPTTTPPTIPEDTPTIPSPTIPQQEANTNNNGASEARAIDDHSGTAMFAQFSNLNGR 882
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00886 882 ProSiteProfiles Protein kinase domain profile. 523 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00886 882 Pfam Protein tyrosine and serine/threonine kinase 526 721 IPR001245 GO:0004672|GO:0006468
Vifa4g00886 882 MobiDBLite consensus disorder prediction 843 860 - -
Vifa4g00886 882 CDD STKc_IRAK 529 793 - -
Vifa4g00886 882 Gene3D - 56 206 - -
Vifa4g00886 882 Gene3D - 231 415 - -
Vifa4g00886 882 FunFam Receptor-like protein kinase FERONIA 599 813 - -
Vifa4g00886 882 FunFam receptor-like protein kinase FERONIA 486 598 - -
Vifa4g00886 882 SUPERFAMILY Protein kinase-like (PK-like) 506 790 IPR011009 -
Vifa4g00886 882 Gene3D Transferase(Phosphotransferase) domain 1 599 818 - -
Vifa4g00886 882 SMART serkin_6 523 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa4g00886 882 FunFam Putative receptor-like protein kinase 56 206 - -
Vifa4g00886 882 MobiDBLite consensus disorder prediction 824 842 - -
Vifa4g00886 882 Gene3D Phosphorylase Kinase; domain 1 485 598 - -
Vifa4g00886 882 FunFam Receptor-like protein kinase FERONIA 230 415 - -
Vifa4g00886 882 ProSitePatterns Protein kinases ATP-binding region signature. 529 551 IPR017441 GO:0005524
Vifa4g00886 882 ProSitePatterns Serine/Threonine protein kinases active-site signature. 643 655 IPR008271 GO:0004672|GO:0006468
Vifa4g00886 882 MobiDBLite consensus disorder prediction 817 860 - -
Vifa4g00886 882 PANTHER OS07G0166700 PROTEIN 509 799 IPR045272 GO:0004714|GO:0006468
Vifa4g00886 882 Pfam Malectin-like domain 59 412 IPR024788 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00886 Vifa-Chr4 254389489 254392137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00886 51 882 Receptor kinase-like Gene Family AT4G39110 67.661 0.0 1172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Vifa4g00886 Malectin_like 4.3e-35 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00886 - - tpra:123893803 1507.27