Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00884 ATGGAGTCCTCGGTCAACTTGCTTCCCGCAAAACGCCCTGCTCCAAATGGAGTTTCATCAGATGAAGGATGCAAAAAACGTAAATTATCAAGTTATGTTAATGTCGTAGATTACAAAACTCCTTATGCAATCTCAGATGTTCTAAATCGTTTAGAGAGTGGAGAATTTGGAAGTGTTACAAAGGATATTGAAGCTCTTCTAAACCGGAAAATGCAAATAATTGGCCCCTGCCTTGCAAAACATCCCAAACTTATCAACCAATTCCCGAAAGTGGTAACGAATCATCATGAGGAAACTCCCATCTCAAATAAAAAAATGAATGGTATGTCACATCAAAATGTCATAGATTTGGATTTGGATGGAGAGCACATGGAAAAGGATGTTTTGGCACCAAAAACAGAAAAGGATGTTCCTGGCACGCCATCTCCCATTGTAATAATTGATTCAGACGAGGAAGATGATAGGGAGCAAAAGTCTCATCTTCCATTTCATGAAATTGCATTGCCGAGACCAGTCCAGTCTCCTGCACTAAAAATGACTGGCTATCATCATGCTCCCATTGCTTACCATGATGCTCCCATTGCTCACCATGATGCTCCCATTGCTTACCATGGTGCTCCCATTTCTCACCGTGGAGAGAGTGCAGATCTAAAATTTGAAACAAGTCGGCCTCCTAAAAATCCTCCTAAAGATCCTCCTAAAGATAACACAAGGAAAGATAAAGGTGTTTATGTTGGTGTACCCGAGGAAGAAGATCACGAGGTTGATGCTGTAGATGATGGGCTAGACGATATTTGGAGAGAAATGTCAATGGCAATAGAAACTTCTAAAGATGTTTCTGCAGATCCTCAAACTGAAGAAGAAGAGGAAAAGGATGCTGACTGCGATCATACTTTCGTTTTAAAAGACGATCTTGGTTATGTTTGTCGTGTTTGTGGGGTTATTGACAGAGGAATTGAAACCATATTTGAGTTCCAATATAAGGTTAAAAGGAGCACAAGAACTTATGTCTCTGATTCAGGCAATGCCAAAGAAAAAATGGATGCTTTTGGTGTTAAGGTTACTAAAGACGATCTTATGGTTACTGATGTATCAGCACATCCTCGGCATGCGAATCAAATGAAACCACACCAAGTCGAAGGATTCAACTTTTTAGTTAGAAACTTGGCGGGGGACAATCCCGGGGGATGTATCCTGGCTCATGCTCCAGGATCTGGAAAGACTTTCATGATTATCAGTTTCATGCAAAGTTTTCTAGGGAAGTATCCTAATGCCCGACCTCTAGTGGTGCTTCCCAAGGGAATATTGTCGACTTGGAAAAAAGAGTTTCAAACATGGCAAGTGGAAGATATACCACTTTATGACCTATACACTGCGAAGGCAGACAGTAGACTTCAGCAACTGGAGGTGTTAAAACAATGGATGAACAACAAGAGTATCCTTTTCTTAGGATACAAACAGTTCTCTTCCATTGTGTGTGATGATAGTAATACCAATGCATCGAAGAATTGCCAAGAGATATTACTTAATGTTCCCTCAATTCTCATTTTAGACGAGGGACACACTCCAAGAAATGAGAATACTGATATGGTACAGTCCCTTTGCAAAGTACATACACCAAGGAAAGTTGTGCTGTCTGGAACCCTTTATCAAAATCATGTCAAGGAGGTATTCAACGTTCTCAATCTAGTGCGGCCGAAGTTTTTAAAGATGGACACATCTAAGCCTATTGTTCGACGCATTACGAGTAAGATCTATCATATGCCTGGCGGGAGCAGCAGCTTCTATGATTTAATCGAGAACACATTGCAGAAAGACCCGGATTTTAAAAGGAAAGTGGGTTTAATTCATGATTTGCGTGAGATGACTCATCAAGTTCTTCATTACTATAAAGGAGATTTTCTTGATGAGCTTCCTGGCCTGGTAGATTTTACTGTATTTCTCAAACTTACACTTAAACAGAAGCATGAAGTTGAGAAAGTAAAGAGGATATCTAGAAAGTTCAAAATGTCTTCTGTGGGCAGTGCAGTGTATCTGCACCCAAAGTTGATGCCCATTGCAGAAAAAATAGGTGAAAAGATGATAAAATCTGGTGAAAAGAAGGCAATACCTGATCATGTAATAGACAATTTTATAGAGGACCTAGATATAAGAGATGGTGTCAAATCAAAATTCTTTCGCAATATGCTGAACCTATGCGAATCAACTGGGGAGAAGCTTCTGGTGTTCAGTCAATATCTTTTGCCTTTGAAATATTTGGAAAGGTTAGCTATAAAATGGAATAAATGGAGTGTTGGAAAAGAAATCTTTGTGATATCAGGAGATACACAACCTGAAGAAAGGGAGTGTTCTATGGAAATGTTCAACAATTCATCGGATGCAAAAGTATTTTTTGGGTCAATCAAAGCGTGCGGCGAGGGTATATCATTGGTTGGGGCATCCCGTGTCATCATATTGGATGTTCACCTAAATCCGTCTGTTACTCGTCAAGCTATTGGCCGTGCTTTCCGGCCAGGCCAGAAAAAGAAAGTCTTTGTGTATCGATTGGTAGCTGCTGATTCTCCAGAAGAGGAAGACCACACTACTTGTTTCAAGAAGGAATTAATTTCAAAAATGTGGTTTGAATGGAATGAATATTGTGGTGACAGAGCTTTTGAAGTTGAGACACTCGATGTGAAGGAATGTGGTGATTTTTTTCTGGAAAGTCCATTGTTAAGGGAAGACGTAAAAGCCCTGCATAAAAGGTAA 2748 0.3996 MESSVNLLPAKRPAPNGVSSDEGCKKRKLSSYVNVVDYKTPYAISDVLNRLESGEFGSVTKDIEALLNRKMQIIGPCLAKHPKLINQFPKVVTNHHEETPISNKKMNGMSHQNVIDLDLDGEHMEKDVLAPKTEKDVPGTPSPIVIIDSDEEDDREQKSHLPFHEIALPRPVQSPALKMTGYHHAPIAYHDAPIAHHDAPIAYHGAPISHRGESADLKFETSRPPKNPPKDPPKDNTRKDKGVYVGVPEEEDHEVDAVDDGLDDIWREMSMAIETSKDVSADPQTEEEEEKDADCDHTFVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKRSTRTYVSDSGNAKEKMDAFGVKVTKDDLMVTDVSAHPRHANQMKPHQVEGFNFLVRNLAGDNPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQTWQVEDIPLYDLYTAKADSRLQQLEVLKQWMNNKSILFLGYKQFSSIVCDDSNTNASKNCQEILLNVPSILILDEGHTPRNENTDMVQSLCKVHTPRKVVLSGTLYQNHVKEVFNVLNLVRPKFLKMDTSKPIVRRITSKIYHMPGGSSSFYDLIENTLQKDPDFKRKVGLIHDLREMTHQVLHYYKGDFLDELPGLVDFTVFLKLTLKQKHEVEKVKRISRKFKMSSVGSAVYLHPKLMPIAEKIGEKMIKSGEKKAIPDHVIDNFIEDLDIRDGVKSKFFRNMLNLCESTGEKLLVFSQYLLPLKYLERLAIKWNKWSVGKEIFVISGDTQPEERECSMEMFNNSSDAKVFFGSIKACGEGISLVGASRVIILDVHLNPSVTRQAIGRAFRPGQKKKVFVYRLVAADSPEEEDHTTCFKKELISKMWFEWNEYCGDRAFEVETLDVKECGDFFLESPLLREDVKALHKR 915
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00884 915 Pfam Helicase conserved C-terminal domain 730 838 IPR001650 -
Vifa4g00884 915 MobiDBLite consensus disorder prediction 216 241 - -
Vifa4g00884 915 Gene3D - 342 590 IPR038718 -
Vifa4g00884 915 CDD SF2_C_SNF 722 850 - -
Vifa4g00884 915 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 246 913 IPR044567 GO:0080188
Vifa4g00884 915 SMART helicmild6 754 839 IPR001650 -
Vifa4g00884 915 SMART ultradead3 370 580 IPR014001 -
Vifa4g00884 915 Gene3D - 639 901 IPR027417 -
Vifa4g00884 915 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 361 569 IPR027417 -
Vifa4g00884 915 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 388 567 IPR014001 -
Vifa4g00884 915 MobiDBLite consensus disorder prediction 1 23 - -
Vifa4g00884 915 Pfam SNF2-related domain 394 606 IPR000330 GO:0005524|GO:0140658
Vifa4g00884 915 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 513 877 IPR027417 -
Vifa4g00884 915 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 725 893 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00884 Vifa-Chr4 253166280 253173001 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00884 736 857 RAD5 or RAD16-like Gene Family AT5G43530 36.885 7.50e-14 74.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Vifa4g00884 SNF2_N 2.6e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00884 K10875 - gmx:100780454 1269.99