Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00882 ATGTACATCAAGGAGATCTGCTTAGAAGGTTTCAAATCCTACGCTACCCGAACCGTTGTTCCAGGCTTCGATCGATTCTTCAACGCCATCACTGGTTTGAACGGTTCCGGCAAATCGAACATTCTCGATTCGATTTGCTTCGTGCTTGGAATTACCAATTTGCAGCAGGTTCGTGCTTCGAATCTTCAGGAACTCGTGTATAAGCAAGGACAAGCAGGAATCACTAAGGCTACTGTTTCGATTGTGTTTGATAATTCTGAAAGGAGTAGGAGTCCTCTTGGATATGAAGGCCATTCTGAGATTACCGTCACTAGACAGATTGTGGTTGGAGGAAGGAACAAATATTTGATAAATGGGAAACTTGCACAGCCTAGTCAAGTCCAAAACCTTTTCCATTCAGTGCAACTAAATGTTAACAATCCACATTTCCTTATCATGCAAGGGAGGATTACTAAGGTTTTAAATATGAAACCGCCAGAGATATTGTCCATGCTTGAGGAAGCTGCGGGGACAAGAATGTACGAGACTAAGAAAGAGGCTGCTCTTAAAACTCTTGAGAAGAAGCAGAGTAAGGTGGATGAGATCAACAAGCTTCTTGATCAGGAGATACTTCCAGCTTTGGAGAAGTTAAGGAAGGAAAGAACACAGTACATGCAATGGGCTAATTGCAATGCTGAGTTAGATAGGCTGAGAAGATTCTGTATTGCTTACGAGTATGTTCAAGCAGAGACTATTAAAAACAATGCTATTTCTGAGGTGGAAAAAGTAAACGCTAAGATTGCTGAGATTGATGACATGGCTAAGACAACTATGGTGGATGTAAAGGAAATGGAGACTAAAATAGCTCAGTTGACTGCTGAGAAGGAAGCAAGCATGGGTGGGGAAATGAAATCTTTGTCAGAGAACGTAGACAAGCTTTCCCAAACTCTTGTGAAGGAAACGTCTGTGCTAAACAATAAAAAAGACACTCTGAAGAGCGAAGAAGTCAACAAAGGAAAAATTGTTAAAAGTATTGAAGAATTGAAGAAATCTGTAGAAGCGAAGGCCTCTGCCATTAAAAAGGCCGAAGAAGGAGCAGCTGATTTGAAAAGTAGGGTTGAGGAGCTCTCAAAGAGCCTAGAAGAGCATGAAAAGGAATACCAGGGTGTCTTAGCTGGCAAGAGCAGTGGTAATGAGGAGAAATGCTTAGAAGACCAACTAGGCGATGCCAAGGTAGCAGTTGGGAGTGCTGAAACAGAATTAAAACAGCTGAAAACCAAAATTAGCCATTGTGAAAAGGAACTGAGAGAGAAAACAGATCAATTGAAATCAAAACAGGATGAGGCTACTAATGTGAAAAAACAGCTCGAAGATAAAAAAAAGGATGTTGAAAACCTCAAAACAAGGTTGGAGTCTCTTCCTTATAAAGAGGGTGAGATGGAAGCTTTGCAGAAGGAGCGTGAATCTGAGAGGGATAGTGTGCACAAGTTGAAGGCTGAAATCCGCAATATTTCAGTAAACTTAGCTAATGTTGATTTTTCATACCGCGATCCTGTCAAGAACTTTGATAGGTCAAAGGTGAAGGGTGTTGTTGCAAAACTCATCAAAGTGAAAGATAGCTCCACAATGACTGCTCTAGAGGTTTCGGCTGGTGGAAAGTTGTACAATGTTGTAGTTGACACAGAGAGTACTGGAAAGCAGCTACTACAACATGGCAATCTTAGAAGAAGAGTGACAATTATACCTTTGAATAAAATACAATCCTATACTGTTCCCTCTAGAGTTCAACAAGCTGCTGTTAGATTGGTGGGTAAGGAGAATGCCGAAATTGCACTTTCTTTGGTTGGTTATGAAGAAGAATTGAAGAATGCAATGGAATATGTCTTTGGCTCAACCTTTGTTTGCAAAACTATCAGTGCTGCAAAGGAGGTGGCGTTTAGTCGGGAGATTCACACCACAAGTGTCACTCTTGAAGGAGATATATTTCAGCCCAGTGGTCTTCTGACAGGGGGAAGCCGGAAGGGAAGCGGTGATCTATTGAGGCAACTTCATGCCGTGGCTGAGGCTGAGTCAAAACTTTCAGTGCATCAAACTAGGTTATCAGAGATTGAGGCAAAGAACAGAGCTGAGCAAAACGAGCATCACAAGCTTGGAGAATTAGTGAAGAAGCTTGAGCAAGAACTTTTAGAAGCAAAATCTGCTGTCAAAGAAAAGGAACTTTTATATAAGAACTGTGTCAAAACTGTTTCATCACTTGAGAAATCAATCAAAGAACATGCCAATAATCGAGAAACTAGGCTAAAAGGTTTGGAGAAAAAGATAAAGTCGATTAAATCCCAAATGCAGTCATCTTCAAAAGACCTAAAGGTACATGATAATGAAAAGGAAAGGCTTGTAATGGAAAAAGAAGCTGTTATCCAGGAGCAAGCTTCCTTGGAGAATCAATTAGCATCACTGAAAACATTGATTACTGATCTTTCCTCAGAAGTTGAAGAACAAAAATCCATCGTTGCTGCTGCAAGGAATAATCTTGATGAAGTTCAGTCAGAGCTGAATGCAGTTCGTCAGAAAATGAAGCAATGTGACAAGGAAATCAGTGCCATAGTTAAAGAGCAGAAAAAGCTTGAACATAAGATTAGTGAGAATAATCTTGAAAGGAAGAGAATGGAAAATGAGGTAAAACGATTGGAGATGGAACAGAAGGACTGCTCTTTGAGGGTAGATAAGTTGATAGAGAAGCATGCTTGGATAGCTTCTGAAAAACAGCAGTTTGGTAAAAGTGGGACTGATTATGATTTTTCTTCCCGCAATCCTGGTAAATCAAGGGAAGAACTTGAGAAACTTCAGGCTGAACAATCTGGGCTTGAGAAAAGGGTGAACAAGAAAGTAATGGCAATGTTTGAGAAGGCAGAGGACGAGTATAATGACTTGATGTCAAAGAAAAATATAATTGAGAATGACAAGTCTAAGATCAAGAAGGTGATTGAAGAGCTAGATGAGAAAAAGAAAGAGACACTAAATGTTACCTGGGTCAAAGTGAATACTGACTTTGGATCCATATTTTCTACACTATTGCCGGGCACAATGGCTAAGTTAGAACCTCCAGAAGGATGCAGCTTTCTTGACGGTCTTGAAGTCCGTGTTGCATTTGGAAGTGTGTGGAAACAGTCATTGTCCGAACTGAGTGGAGGTCAGCGATCATTGCTTGCACTTTCTCTGATTCTGGCACTGCTTCTTTTTAAACCTGCTCCACTTTACATCTTAGACGAGGTTGATGCAGCTCTTGATTTGAGCCACACACAAAACATTGGGAAAATGATAAAAAATCACTTTCCACACTCCCAGTTTATTGTTGTATCACTAAAGGAAGGCATGTTCAATAATGCAAATGTTCTTTTCCGAACAAAATTCGTAGACGGTGTTTCAACGGTTCAGCGAACTGTTGCAAAGCAAAACAAGTGA 3441 0.4045 MYIKEICLEGFKSYATRTVVPGFDRFFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSIVFDNSERSRSPLGYEGHSEITVTRQIVVGGRNKYLINGKLAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYETKKEAALKTLEKKQSKVDEINKLLDQEILPALEKLRKERTQYMQWANCNAELDRLRRFCIAYEYVQAETIKNNAISEVEKVNAKIAEIDDMAKTTMVDVKEMETKIAQLTAEKEASMGGEMKSLSENVDKLSQTLVKETSVLNNKKDTLKSEEVNKGKIVKSIEELKKSVEAKASAIKKAEEGAADLKSRVEELSKSLEEHEKEYQGVLAGKSSGNEEKCLEDQLGDAKVAVGSAETELKQLKTKISHCEKELREKTDQLKSKQDEATNVKKQLEDKKKDVENLKTRLESLPYKEGEMEALQKERESERDSVHKLKAEIRNISVNLANVDFSYRDPVKNFDRSKVKGVVAKLIKVKDSSTMTALEVSAGGKLYNVVVDTESTGKQLLQHGNLRRRVTIIPLNKIQSYTVPSRVQQAAVRLVGKENAEIALSLVGYEEELKNAMEYVFGSTFVCKTISAAKEVAFSREIHTTSVTLEGDIFQPSGLLTGGSRKGSGDLLRQLHAVAEAESKLSVHQTRLSEIEAKNRAEQNEHHKLGELVKKLEQELLEAKSAVKEKELLYKNCVKTVSSLEKSIKEHANNRETRLKGLEKKIKSIKSQMQSSSKDLKVHDNEKERLVMEKEAVIQEQASLENQLASLKTLITDLSSEVEEQKSIVAAARNNLDEVQSELNAVRQKMKQCDKEISAIVKEQKKLEHKISENNLERKRMENEVKRLEMEQKDCSLRVDKLIEKHAWIASEKQQFGKSGTDYDFSSRNPGKSREELEKLQAEQSGLEKRVNKKVMAMFEKAEDEYNDLMSKKNIIENDKSKIKKVIEELDEKKKETLNVTWVKVNTDFGSIFSTLLPGTMAKLEPPEGCSFLDGLEVRVAFGSVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGKMIKNHFPHSQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTVAKQNK 1146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00882 1146 Coils Coil 178 198 - -
Vifa4g00882 1146 Coils Coil 953 997 - -
Vifa4g00882 1146 PIRSF SMC 1 758 IPR024704 GO:0005524|GO:0016887
Vifa4g00882 1146 PIRSF SMC 746 1126 IPR024704 GO:0005524|GO:0016887
Vifa4g00882 1146 Coils Coil 788 857 - -
Vifa4g00882 1146 Gene3D - 422 590 - -
Vifa4g00882 1146 CDD ABC_SMC2_euk 1 156 IPR027120 GO:0005524|GO:0016887
Vifa4g00882 1146 Gene3D - 734 911 - -
Vifa4g00882 1146 Gene3D - 966 1146 IPR027417 -
Vifa4g00882 1146 FunFam Structural maintenance of chromosomes 2 518 583 - -
Vifa4g00882 1146 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 1128 IPR027417 -
Vifa4g00882 1146 Coils Coil 863 906 - -
Vifa4g00882 1146 Pfam SMC proteins Flexible Hinge Domain 518 638 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Vifa4g00882 1146 Pfam RecF/RecN/SMC N terminal domain 2 1132 IPR003395 -
Vifa4g00882 1146 SUPERFAMILY Smc hinge domain 476 686 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Vifa4g00882 1146 Coils Coil 267 287 - -
Vifa4g00882 1146 FunFam Structural maintenance of chromosomes 2 966 1145 - -
Vifa4g00882 1146 FunFam Structural maintenance of chromosomes 2 1 202 - -
Vifa4g00882 1146 SUPERFAMILY Tropomyosin 682 863 - -
Vifa4g00882 1146 Gene3D - 1 202 IPR027417 -
Vifa4g00882 1146 Coils Coil 473 493 - -
Vifa4g00882 1146 Gene3D - 591 666 - -
Vifa4g00882 1146 Coils Coil 679 734 - -
Vifa4g00882 1146 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 1 1144 - -
Vifa4g00882 1146 SMART SMC_hinge_2 518 638 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Vifa4g00882 1146 Coils Coil 753 780 - -
Vifa4g00882 1146 Coils Coil 407 466 - -
Vifa4g00882 1146 Coils Coil 338 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00882 Vifa-Chr4 253019556 253033829 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00882 3 170 Structural Maintenance of Chromosomes family AT5G15920 23.214 4.17e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00882 K06674 - gmx:100788674 1873.6