Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00881 ATGTACATCAAGGAGATCTGCTTAGAAGGTTTCAAATCCTACGCTACCCGAACCGTTGTTCCAGGCTTCGATCGATTCTTCAACGCCATCACTGGTTTGAACGGTTCCGGCAAATCGAACATTCTCGATTCGATTTGCTTCGTGCTTGGAATTACCAATTTGCAGCAGGTTCGTGCTTCGAATCTTCAGGAACTCGTGTATAAGCAAGGACAAGCAGGAATCACTAAGGCTACTGTTTCGATTGTGTTTGATAATTCTGAAAGGAGTAGGAGTCCTCTTGGATATGAAGGCCATTCTGAGATTACCGTCACTAGACAGATTGTGGTTGGAGGAAGGAACAAATATTTGATAAATGGGAAACTTGCACAGCCTAGTCAAGTCCAAAACCTTTTCCATTCAGTGCAACTAAATGTTAACAATCCACATTTCCTTATCATGCAAGGGAGGATTACTAAGGTTTTAAATATGAAACCGCCAGAGATATTGTCCATGCTTGAGGAAGCTGCGGGGACAAGAATGTACGAGACTAAGAAAGAGGCTGCTCTTAAAACTCTTGAGAAGAAGCAGAGTAAGGTGGATGAGATCAACAAGCTTCTTGATCAGGAGATACTTCCAGCTTTGGAGAAGTTAAGGAAGGAAAGAACACAGTACATGCAATGGGCTAATTGCAATGCTGAGTTAGATAGGCTGAGAAGATTCTGTATTGCTTACGAGTATGTTCAAGCAGAGACTATTAAAAACAATGCTATTTCTGAGGTGGAAAAAGTAAACGCTAAGATTGCTGAGATTGATGACATGGCTAAGACAACTATGGTGGATGTAAAGGAAATGGAGACTAAAATAGCTCAGTTGACTGCTGAGAAGGAAGCAAGCATGGGTGGGGAAATGAAATCTTTGTCAGAGAACGTAGACAAGCTTTCCCAAACTCTTGTGAAGGAAACGTCTGTGCTAAACAATAAAAAAGACACTCTGAAGAGCGAAGAAGTCAACAAAGGAAAAATTGTTAAAAGTATTGAAGAATTGAAGAAATCTGTAGAAGCGAAGGCCTCTGCCATTAAAAAGGCCGAAGAAGGAGCAGCTGATTTGAAAAGTAGGGTTGAGGAGCTCTCAAAGAGCCTAGAAGAGCATGAAAAGGAATACCAGGGTGTCTTAGCTGGCAAGAGCAGTGGTAATGAGGAGAAATGCTTAGAAGACCAACTAGGCGATGCCAAGGTAGCAGTTGGGAGTGCTGAAACAGAATTAAAACAGCTGAAAACCAAAATTAGCCATTGTGAAAAGGAACTGAGAGAGAAAACAGATCAATTGAAATCAAAACAGGATGAGGCTACTAATGTGAAAAAACAGCTCGAAGATAAAAAAAAGGATGTTGAAAACCTCAAAACAAGGTTGGAGTCTCTTCCTTATAAAGAGGGTGAGATGGAAGCTTTGCAGAAGGAGCGTGAATCTGAGAGGGATAGTGTGCACAAGTTGAAGGCTGAAATCCGCAATATTTCAGTAAACTTAGCTAATGTTGATTTTTCATACCGCGATCCTGTCAAGAACTTTGATAGGTCAAAGGTGAAGGGTGTTGTTGCAAAACTCATCAAAGTGAAAGATAGCTCCACAATGACTGCTCTAGAGGTTTCGGCTGGTGGAAAGTTGTACAATGTTGTAGTTGACACAGAGAGTACTGGAAAGCAGCTACTACAACATGGCAATCTTAGAAGAAGAGTGACAATTATACCTTTGAATAAAATACAATCCTATACTGTTCCCTCTAGAGTTCAACAAGCTGCTGTTAGATTGGTGGGTAAGGAGAATGCCGAAATTGCACTTTCTTTGGTTGGTTATGAAGAAGAATTGAAGAATGCAATGGAATATGTCTTTGGCTCAACCTTTGTTTGCAAAACTATCAGTGCTGCAAAGGAGGTGGCGTTTAGTCGGGAGATTCACACCACAAGTGTCACTCTTGAAGGAGATATATTTCAGCCCAGTGGTCTTCTGACAGGGGGAAGCCGGAAGGGAAGCGGTGATCTATTGAGGCAACTTCATGCCGTGGCTGAGGCTGAGTCAAAACTTTCAGTGCATCAAACTAGGTTATCAGAGATTGAGGCAAAGATCACAGAGCTTTTTCCTCTTCATAGAGAGTATAAAGACCTCAAAGCAACATTAGAACTCAAGTCACATGATCTTTCATTGTTTCAGAACAGAGCTGAGCAAAACGAGCATCACAAGCTTGGAGAATTAGTGAAGAAGCTTGAGCAAGAACTTTTAGAAGCAAAATCTGCTGTCAAAGAAAAGGAACTTTTATATAAGAACTGTGTCAAAACTGTTTCATCACTTGAGAAATCAATCAAAGAACATGCCAATAATCGAGAAACTAGGCTAAAAGGTTTGGAGAAAAAGATAAAGTCGATTAAATCCCAAATGCAGTCATCTTCAAAAGACCTAAAGGTACATGATAATGAAAAGGAAAGGCTTGTAATGGAAAAAGAAGCTGTTATCCAGGAGCAAGCTTCCTTGGAGAATCAATTAGCATCACTGAAAACATTGATTACTGATCTTTCCTCAGAAGTTGAAGAACAAAAATCCATCGTTGCTGCTGCAAGGAATAATCTTGATGAAGTTCAGTCAGAGCTGAATGCAGTTCGTCAGAAAATGAAGCAATGTGACAAGGAAATCAGTGCCATAGTTAAAGAGCAGAAAAAGCTTGAACATAAGATTAGTGAGAATAATCTTGAAAGGAAGAGAATGGAAAATGAGGTAAAACGATTGGAGATGGAACAGAAGGACTGCTCTTTGAGGGTAGATAAGTTGATAGAGAAGCATGCTTGGATAGCTTCTGAAAAACAGCAGTTTGGTAAAAGTGGGACTGATTATGATTTTTCTTCCCGCAATCCTGGTAAATCAAGGGAAGAACTTGAGAAACTTCAGGCTGAACAATCTGGGCTTGAGAAAAGGGTGAACAAGAAAGTAATGGCAATGTTTGAGAAGGCAGAGGACGAGTATAATGACTTGATGTCAAAGAAAAATATAATTGAGAATGACAAGTCTAAGATCAAGAAGGTGATTGAAGAGCTAGATGAGAAAAAGAAAGAGACACTAAATGTTACCTGGGTCAAAGTGAATACTGACTTTGGATCCATATTTTCTACACTATTGCCGGGCACAATGGCTAAGTTAGAACCTCCAGAAGGATGCAGCTTTCTTGACGGTCTTGAAGTCCGTGTTGCATTTGGAAGTGTGTGGAAACAGTCATTGTCCGAACTGAGTGGAGGTCAGCGATCATTGCTTGCACTTTCTCTGATTCTGGCACTGCTTCTTTTTAAACCTGCTCCACTTTACATCTTAGACGAGGTTGATGCAGCTCTTGATTTGAGCCACACACAAAACATTGGGAAAATGATAAAAAATCACTTTCCACACTCCCAGTTTATTGTTGTATCACTAAAGGAAGGCATGTTCAATAATGCAAATGTTCTTTTCCGAACAAAATTCGTAGACGGTGTTTCAACGGTTCAGCGAACTGTTGCAAAGCAAAACAAGTGA 3528 0.4033 MYIKEICLEGFKSYATRTVVPGFDRFFNAITGLNGSGKSNILDSICFVLGITNLQQVRASNLQELVYKQGQAGITKATVSIVFDNSERSRSPLGYEGHSEITVTRQIVVGGRNKYLINGKLAQPSQVQNLFHSVQLNVNNPHFLIMQGRITKVLNMKPPEILSMLEEAAGTRMYETKKEAALKTLEKKQSKVDEINKLLDQEILPALEKLRKERTQYMQWANCNAELDRLRRFCIAYEYVQAETIKNNAISEVEKVNAKIAEIDDMAKTTMVDVKEMETKIAQLTAEKEASMGGEMKSLSENVDKLSQTLVKETSVLNNKKDTLKSEEVNKGKIVKSIEELKKSVEAKASAIKKAEEGAADLKSRVEELSKSLEEHEKEYQGVLAGKSSGNEEKCLEDQLGDAKVAVGSAETELKQLKTKISHCEKELREKTDQLKSKQDEATNVKKQLEDKKKDVENLKTRLESLPYKEGEMEALQKERESERDSVHKLKAEIRNISVNLANVDFSYRDPVKNFDRSKVKGVVAKLIKVKDSSTMTALEVSAGGKLYNVVVDTESTGKQLLQHGNLRRRVTIIPLNKIQSYTVPSRVQQAAVRLVGKENAEIALSLVGYEEELKNAMEYVFGSTFVCKTISAAKEVAFSREIHTTSVTLEGDIFQPSGLLTGGSRKGSGDLLRQLHAVAEAESKLSVHQTRLSEIEAKITELFPLHREYKDLKATLELKSHDLSLFQNRAEQNEHHKLGELVKKLEQELLEAKSAVKEKELLYKNCVKTVSSLEKSIKEHANNRETRLKGLEKKIKSIKSQMQSSSKDLKVHDNEKERLVMEKEAVIQEQASLENQLASLKTLITDLSSEVEEQKSIVAAARNNLDEVQSELNAVRQKMKQCDKEISAIVKEQKKLEHKISENNLERKRMENEVKRLEMEQKDCSLRVDKLIEKHAWIASEKQQFGKSGTDYDFSSRNPGKSREELEKLQAEQSGLEKRVNKKVMAMFEKAEDEYNDLMSKKNIIENDKSKIKKVIEELDEKKKETLNVTWVKVNTDFGSIFSTLLPGTMAKLEPPEGCSFLDGLEVRVAFGSVWKQSLSELSGGQRSLLALSLILALLLFKPAPLYILDEVDAALDLSHTQNIGKMIKNHFPHSQFIVVSLKEGMFNNANVLFRTKFVDGVSTVQRTVAKQNK 1175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00881 1175 Coils Coil 817 886 - -
Vifa4g00881 1175 Coils Coil 178 198 - -
Vifa4g00881 1175 Gene3D - 422 590 - -
Vifa4g00881 1175 Coils Coil 982 1026 - -
Vifa4g00881 1175 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 1157 IPR027417 -
Vifa4g00881 1175 Coils Coil 892 935 - -
Vifa4g00881 1175 FunFam Structural maintenance of chromosomes 2 995 1174 - -
Vifa4g00881 1175 CDD ABC_SMC2_euk 1 156 IPR027120 GO:0005524|GO:0016887
Vifa4g00881 1175 SUPERFAMILY Tropomyosin 681 891 - -
Vifa4g00881 1175 SUPERFAMILY Smc hinge domain 476 686 IPR036277 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Vifa4g00881 1175 Coils Coil 729 763 - -
Vifa4g00881 1175 FunFam Structural maintenance of chromosomes 2 1 202 - -
Vifa4g00881 1175 Pfam SMC proteins Flexible Hinge Domain 518 638 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Vifa4g00881 1175 Coils Coil 267 287 - -
Vifa4g00881 1175 PANTHER STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 1 1173 - -
Vifa4g00881 1175 FunFam Structural maintenance of chromosomes 2 518 583 - -
Vifa4g00881 1175 Gene3D - 994 1175 IPR027417 -
Vifa4g00881 1175 Pfam RecF/RecN/SMC N terminal domain 2 1161 IPR003395 -
Vifa4g00881 1175 Gene3D - 1 202 IPR027417 -
Vifa4g00881 1175 Coils Coil 473 493 - -
Vifa4g00881 1175 Coils Coil 782 809 - -
Vifa4g00881 1175 PIRSF SMC 1 1156 IPR024704 GO:0005524|GO:0016887
Vifa4g00881 1175 SMART SMC_hinge_2 518 638 IPR010935 GO:0005515|GO:0005524|GO:0005694|GO:0051276
Vifa4g00881 1175 Gene3D - 591 666 - -
Vifa4g00881 1175 Coils Coil 679 699 - -
Vifa4g00881 1175 Coils Coil 407 466 - -
Vifa4g00881 1175 Coils Coil 338 386 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00881 Vifa-Chr4 253019556 253033829 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00881 3 170 Structural Maintenance of Chromosomes family AT5G15920 23.214 4.12e-07 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00881 K06674 - gmx:100788674 1925.6