Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00878 ATGCCAGGGAAAGCTGAAACTGATGAATGTGGAGTAAAGCATAGTGATCATCTCAATGCTTCAATCATGAATGGTCTCACTAATTCTCGCGGGGACGTTGCCAAGGAGCACCCAAACAACAAACACGCCCCGTCCTCAACTCCATTTCCCAATGCTCATTCAACTATTTTAACATCGCCTTATTCAAGTCCACAATTCTCTCCGTTCTTGGCTACTTATGGACAACCAGCTATGATGAATCCTGAGATATACCAAATGCATCATGCTAGAGTGCTTTTGCCACTTGTAATGGAAGAGGAACCTGTTTATGTTAACGCAAAGCAGTATCATGGTATTTTGAGGCGAAGACAGTCGCGCGCTAAGGCGGAGCTTGAAAAGAAAGTTATCAAAGTTAGAAAGCCGTACCTTCACGAATCCCGTCACCTACACGCTTTGAGAAGAGCGAGGGGAAACGGTGGTCGCTTTCTCAATACAAAGAAGCTCGAACAAAACGATTCTAATGCCGCCATAGAAAAAGGAAACAATACTGGTGCAACATTGGTTACCAACAAAGAGAATCAAGCCTCGTCGATGCATAAAATGCCGGGCTTCCACGATGGAAATGGCTTTACAGCAGCATGTCATTCACAGGAGGCAATAGGTGAAGATGAAGGGTTTTGCTTCATCCAACTTATGATGCTGTGA 684 0.4444 MPGKAETDECGVKHSDHLNASIMNGLTNSRGDVAKEHPNNKHAPSSTPFPNAHSTILTSPYSSPQFSPFLATYGQPAMMNPEIYQMHHARVLLPLVMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKVRKPYLHESRHLHALRRARGNGGRFLNTKKLEQNDSNAAIEKGNNTGATLVTNKENQASSMHKMPGFHDGNGFTAACHSQEAIGEDEGFCFIQLMML 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00878 227 ProSitePatterns NF-YA/HAP2 subunit signature. 103 123 IPR018362 GO:0003677|GO:0016602
Vifa4g00878 227 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 100 155 IPR001289 GO:0003700|GO:0006355
Vifa4g00878 227 MobiDBLite consensus disorder prediction 22 55 - -
Vifa4g00878 227 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 32 188 IPR001289 GO:0003700|GO:0006355
Vifa4g00878 227 MobiDBLite consensus disorder prediction 40 55 - -
Vifa4g00878 227 PRINTS CCAAT-binding transcription factor subunit B signature 132 155 IPR001289 GO:0003700|GO:0006355
Vifa4g00878 227 PRINTS CCAAT-binding transcription factor subunit B signature 101 123 IPR001289 GO:0003700|GO:0006355
Vifa4g00878 227 SMART cbf3 97 158 IPR001289 GO:0003700|GO:0006355
Vifa4g00878 227 Gene3D - 98 159 - -
Vifa4g00878 227 ProSiteProfiles NF-YA/HAP2 family profile. 98 158 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00878 Vifa-Chr4 252195290 252196571 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00878 55 187 CCAAT-HAP2 Transcription Factor Family AT5G12840 46.377 9.31e-35 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vifa4g00878 CBFB_NFYA 5.4e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00878 K08064 - gmx:100782085 252.677