Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00848 ATGGTTGATCAAATTGAGTCATGTTCGCCTAATACGTTGGTACAATGTCGAATATGTCACGATGAAGATGAAGACTTAAACATGGATACACCTTGTTCTTGTTCTGGTACATTGCAGTATGCTCATAGAATATGTGTGCAAAGATGGTGCAATGAGAAAGGTGATACTACTTGTGAGATTTGCCAACAGCAATTTAAAGGCTACACTGCTCCTCAAGCTCCTTTGTTTCACTATAGGGGCAACTGGGAAATTCCAAGAGTTGGTTTCAATAATCATCAGTTCATAGCATTGTTTCCTGCTAATCATGAATTTCTAGACTTTAATTTTGAATATTCAGCTCCCTCTACAAGGAGCCGCGTGTTTATTCGCATTGTTGCCATCATTTCAGGAAACAACATCAGTGAGAAGGCTTATGAGGATGGAAGAACAATGGTGGAGAGTAAGACAGCAGACCTGAGATCTCAAATCAGGCGAAAAGGTGACACAAACCAAGCTTCAAGTATAAGGAATCCATGGCAGCAATCAGATCAGACACAGTCTCATTCTAATCATGAAACACAACTTAAGCAATCCCGAGACAATATATTTGTTGCAGGAACAGACACAAGCACGTACACACTAGAATGGGCAATGGCAGAGTTAATGCACAATCCAGAAATCATGTCAAAAGTACAAAATGAACTCGAACAAGTTGTTGGCAAAGGTATTCCAGTCGAAGAAACAGACATAGCCAAATTACCATACATGCAAGCAGTTATAAAAGAGACGTTTCGTGTACATCCACCAGTTCCGTTATTACTACCTCGCAAAGCAGAAACAGATGTTGAAATTGGTGACTACATTATTCCAAAAGATGCACAAGTTTTGGTTAATGCTTGGGTTATTGGCAGAGATCCAAGTAAATGGGAGAATCCTAATGCTTTTGTGCCGGAGAGATTTTTCAATAGTGAGATTGATTTTAAAGGACATCATTTTGAGCTTATTCCATTTGGGTCTGGTAGAAGAATTTGTCCTGGTTTGCCTTTGGCTATTAGAATGTTGCCTTTGATGTTGGGATCTTTGGTTAATTGCTTTGATTGGAGACTTGAAGATGGATTGAATGTCGATGATTTGAATAAGGAAGATGAGTATGGGATTACCTTGGAAAAATCTCAACCTGTGAGAATTGTTCCAATCAAATTGACTAAGCAATAA 1194 0.3886 MVDQIESCSPNTLVQCRICHDEDEDLNMDTPCSCSGTLQYAHRICVQRWCNEKGDTTCEICQQQFKGYTAPQAPLFHYRGNWEIPRVGFNNHQFIALFPANHEFLDFNFEYSAPSTRSRVFIRIVAIISGNNISEKAYEDGRTMVESKTADLRSQIRRKGDTNQASSIRNPWQQSDQTQSHSNHETQLKQSRDNIFVAGTDTSTYTLEWAMAELMHNPEIMSKVQNELEQVVGKGIPVEETDIAKLPYMQAVIKETFRVHPPVPLLLPRKAETDVEIGDYIIPKDAQVLVNAWVIGRDPSKWENPNAFVPERFFNSEIDFKGHHFELIPFGSGRRICPGLPLAIRMLPLMLGSLVNCFDWRLEDGLNVDDLNKEDEYGITLEKSQPVRIVPIKLTKQ 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00848 397 SMART ringv_2 15 62 IPR011016 GO:0008270
Vifa4g00848 397 MobiDBLite consensus disorder prediction 149 192 - -
Vifa4g00848 397 SUPERFAMILY Cytochrome P450 118 390 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g00848 397 SUPERFAMILY RING/U-box 13 66 - -
Vifa4g00848 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 72 IPR013083 -
Vifa4g00848 397 PANTHER CYTOCHROME P450, FAMILY 76, SUBFAMILY C, POLYPEPTIDE 5-RELATED 177 393 - -
Vifa4g00848 397 Pfam Protein of unknown function (DUF3675) 67 128 IPR022143 -
Vifa4g00848 397 MobiDBLite consensus disorder prediction 159 192 - -
Vifa4g00848 397 CDD RING_CH-C4HC3_MARCH 16 62 - -
Vifa4g00848 397 ProSiteProfiles Zinc finger RING-CH-type profile. 8 68 IPR011016 GO:0008270
Vifa4g00848 397 FunFam Geraniol 8-hydroxylase 143 390 - -
Vifa4g00848 397 PRINTS P450 superfamily signature 198 215 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g00848 397 PRINTS P450 superfamily signature 337 348 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g00848 397 PRINTS P450 superfamily signature 328 337 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g00848 397 PRINTS P450 superfamily signature 251 262 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g00848 397 Pfam RING-variant domain 16 61 IPR011016 GO:0008270
Vifa4g00848 397 Pfam Cytochrome P450 144 379 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g00848 397 Gene3D Cytochrome P450 100 396 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g00848 397 PRINTS E-class P450 group I signature 291 315 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g00848 397 PRINTS E-class P450 group I signature 187 204 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g00848 397 PRINTS E-class P450 group I signature 327 337 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g00848 397 PRINTS E-class P450 group I signature 337 360 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g00848 397 PRINTS E-class P450 group I signature 207 233 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g00848 397 PRINTS E-class P450 group I signature 250 268 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa4g00848 397 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 330 339 IPR017972 GO:0005506|GO:0016705
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00848 Vifa-Chr4 250571035 250573018 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00848 134 393 Cytochrome P450 AT2G45570 46.947 2.95e-84 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00848 - - cave:132173603 299.671