Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00845 ATGAAAACATTAACTGTTAATACTGAAGATTCTTTTTCCAATTTACTGGAATTTGCTTCTAACAACGATATTGAAGGATTTAATCTACTTTTACATAAAGAAGGAGCTTCTTCAATTAACGAGGTAGGGATTTGGTTCGGTCGAGAAAACGGGTCTAAGAAGATTGTTATGGATTATAAAACTCCTTTGATGGTTGCTGCTACTTATGGTAGTATTGATGTTATGAAGCTTATATTGTCGTATCCCGAAGCCGATGTGAATTTTGCTTGTGGGGTGAATAAAAGCACTGCCCTTCACTGTGCTGCTTGTGGTGGGTCTGTTAATGTTGTTGATGCTGTTAGGGTTCTTGTATCGGCTGGTGCCGATGTTGGTTGTGTTGATGGTAATGGGAATCTTCCTGTTGATGTTGTTGTTGTTCCGATGATGATGGAAAGCATGAAAGCGGTTCTTGAGGAACTTCTATTGGATAATGGTTCTGATAATGGATCTGTTGGTGAGGATGCGTTCTCTGGTCCGGTGTCTGTTGATGGCTCTAGTCTTGGTTCGTTTGAAAATGGGATGCTGTTGCCAATGCCATACTCTCCTTCAGTGTCACCGCCTTCTCCTGTGGTGGATTTGAAGTTTACTGAGAAGAAAGAGTATTTGGTTGATCCATCAATTCCTGATATAAAAGACAGCATATATGCAAGTGATGAATTTCGGATGTTTTCTTTCAAGGTTCGTCCTTGTTCTCGTGCGTACTCTCATGATTGGACTGAGTGTCCATTTGTTCATCCGGGAGAGAATGCTCGGAGGAGAGATCCTAGGAAGTTTCATTACAGTTGCGTGCCTTGCCCGGAATTTAGGAAAGGGACTTGTAGGCGTGGAGATTTGTGTGAATATGGTCATGGAGTATTCGAGTGCTGGCTACACCCAGCTCAGTATCGAACACGCCTCTGTAAAGATGGCACTAGTTGTAATAGAAGGGTGTGTTTTTTTGCACACGTTGCAGAGGAATTGAGGCCGTTGTATCCGTCAACTGGGTCTGCGGTTCCTTCACCACGTTCATCTGGATCTGCTCTTAATGTGATGGACATGGCTGCTGCAATGAACCTTTTGCCTGGTTCACCCTCCGCAGCCTCTTCCATGTCTCCTCATTTTGCCCAGCCAATGTCCCCTTCTGGAAATGGCATCTCATGGGCACAGCAAAATGTTCCAGCTCTTCATTTACCAGGAAACAATCTTCAATCTAGTCGATTGAGATCTTCCTTTAGTGCTCGCGACATTCCGCCCGAAAACTTCAGCGTGCTTAGCGATTTTGATGGTCAACAGCACCTTATGAATGACTTGAGTTGTTTCTCACAGCCCCATCCTGGCTCTTGTCAGTCTAAAGCACCAATGCTGTCAAATCATGAAGAGCTCTTTTCTGCTGAGGTTTTATCATCTCCCCGGTATTCTGACCCACCAATGCCTTCTGTTTTTTCCCCCTCACATAAATCAGCTGCTATGAATCACTTTAAACAGCTTCAAAATATGTTATCGCCTATAAATACCAACAGTAACATGCTATCTCCACAAAATGTTGAGCATCCTCTGTTACATGCTTCATTTGGTGTCCCTTTTTCTGGTAGGATGTCTCCTAGAAATGTTGAACCAATCTCCCCAATGAGCCCTCGAATGTCTGCATTTGCTCATCGTGAGAAACTACACCTGCGGAGTATTAGTTCTAGAGACCTTGGTCCAATAAGCATTGAACCAATGTCCCCAATGAGCCCTCGAATGTCGACATTTGTTCACCATGAGAAACAACAGCAACAACTGCGGAGTATTAGTTTTAGGGACATTGGTTCCGACATTCCTGCCTTAGTTAATGGATCCCCTACATGGTCTAAGTGGGGATCTCCAAATGGATTGGCTGATTGGTCGGTGAACGGAGACAGTCTAAGTTGCCAAACGTGCAGTGCATCCTCATTTGAACATAAAATCAAAGGAGAACAAGAGCCTGATCTATCATGGGTCCAATCACTAGTGAAGGATTCATCACCTGAGATGATTAAAGAGAAGCTTGCATCTTCTGACCCTATTGCATCCGGTGATGGATTAAATTCCAATTTACAAATTGAATCAATTGATCATTCTGTTTTAGGAGCTTGGCTTGAGCAAATGAAACTGGATGAGCTTGTAGTCTAA 2169 0.4329 MKTLTVNTEDSFSNLLEFASNNDIEGFNLLLHKEGASSINEVGIWFGRENGSKKIVMDYKTPLMVAATYGSIDVMKLILSYPEADVNFACGVNKSTALHCAACGGSVNVVDAVRVLVSAGADVGCVDGNGNLPVDVVVVPMMMESMKAVLEELLLDNGSDNGSVGEDAFSGPVSVDGSSLGSFENGMLLPMPYSPSVSPPSPVVDLKFTEKKEYLVDPSIPDIKDSIYASDEFRMFSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPEFRKGTCRRGDLCEYGHGVFECWLHPAQYRTRLCKDGTSCNRRVCFFAHVAEELRPLYPSTGSAVPSPRSSGSALNVMDMAAAMNLLPGSPSAASSMSPHFAQPMSPSGNGISWAQQNVPALHLPGNNLQSSRLRSSFSARDIPPENFSVLSDFDGQQHLMNDLSCFSQPHPGSCQSKAPMLSNHEELFSAEVLSSPRYSDPPMPSVFSPSHKSAAMNHFKQLQNMLSPINTNSNMLSPQNVEHPLLHASFGVPFSGRMSPRNVEPISPMSPRMSAFAHREKLHLRSISSRDLGPISIEPMSPMSPRMSTFVHHEKQQQQLRSISFRDIGSDIPALVNGSPTWSKWGSPNGLADWSVNGDSLSCQTCSASSFEHKIKGEQEPDLSWVQSLVKDSSPEMIKEKLASSDPIASGDGLNSNLQIESIDHSVLGAWLEQMKLDELVV 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00845 722 PANTHER UNKEMPT FAMILY MEMBER 17 673 IPR045234 -
Vifa4g00845 722 FunFam Zinc finger CCCH domain-containing protein 66 230 298 - -
Vifa4g00845 722 SUPERFAMILY Ankyrin repeat 6 147 IPR036770 -
Vifa4g00845 722 SMART ANK_2a 58 88 IPR002110 GO:0005515
Vifa4g00845 722 SMART ANK_2a 10 41 IPR002110 GO:0005515
Vifa4g00845 722 SMART ANK_2a 93 125 IPR002110 GO:0005515
Vifa4g00845 722 Gene3D - 272 335 - -
Vifa4g00845 722 ProSiteProfiles Ankyrin repeat profile. 93 128 IPR002110 GO:0005515
Vifa4g00845 722 Gene3D - 4 168 IPR036770 -
Vifa4g00845 722 ProSiteProfiles Ankyrin repeat region circular profile. 93 123 - -
Vifa4g00845 722 SMART c3hfinal6 307 330 IPR000571 GO:0046872
Vifa4g00845 722 SMART c3hfinal6 272 298 IPR000571 GO:0046872
Vifa4g00845 722 Pfam Ankyrin repeats (3 copies) 19 125 IPR002110 GO:0005515
Vifa4g00845 722 ProSiteProfiles Zinc finger C3H1-type profile. 277 299 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00845 Vifa-Chr4 250081600 250083768 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00845 9 719 C2H2 Transcription Factor Family AT5G12850 48.505 0.0 603
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa4g00845 Ank_2 2.5e-09 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00845 - - cam:101514203 1082.4