Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00826 ATGAATACACGCTGCTCTATAACTTTATTTTTCTTTGTCATTTGCTTCATTTTCCCACTTTCTGATGCACTAAACAATGGTTTTAGTGTTGAACTCATCCACCGCGATTCTATAAAATCACCACTCTATAAACCTATTCAAAACAAATATCAAAATATTGTCAATGCTGCACGTCGCTCGATCAACCGTGTCAGTCGTTTCTACAAAAAATCCTTAAACATTTCACCTGAATCAACTATAGTCCCTGACAATGCTGAGTATCTCATGACCTATTCTGTTGGTACTCCACCATTTAAGCTATATGGTATAGCTGATACCGGTAGTGACATTGTTTGGCTTCAATGCGAGCCTTGTGAAGAATGTTTCAATCAAACCACTCCTAAGTTTACGCCTTCAAAATCATCGACTTACAAAAACATTCCTTGCTCATCAAACCTATGTCATTCTGTGAGAGATTCATCTTGCGATGACAAAAATAATTGTGAGTATTCTATTTCTTATGGTGATCGATCACATTCAGAAGGAGATCTTAGTATTGATACTCTTACATTGGAATCCACCACTGGACAATCGGTTCCATTTCCTAATACTGTCATAGGATGTGGAACCGATAATACAGTGTCATTCCAAGGCGTTAGCTCGGGGATAGTTGGTCTTGGAGGTGGACCGGTGTCTTTTATAACACAATTAGGATCGTCAATTGGCGGTAAATTCTCTTATTGTTTACCACCTTCTTTGCTTGTGACCGAAACTCAGTCAAACTCTACGACCAAACTCAATTTTGGAGATGCTGCTATTGTTTCTGGTGATGATGTTGTATCAACTCCTATAGTAAAAAAGGAATCTCCGGTTTTCTACTATTTGACATTGGAATCTTTTAGTGTTGAAAACAAGACAATAGAATTTGGAGGGATATCTTCAAATGACAGCCGCGACAAGGGTAATATAATAATTGATTCAGGCACAACATTGACGCTTTTACCATCTAAATTTTATACCGACTTGGAATCAGCCATAGTTGAATTGGTGAAACTAGAGCGTGTTGACGATCCTAATAAAATATTCAACCTTTGTTATAGTATCACATCAAACGGATATGATTTTCCTCTAATCACCGCGCATTTCGACGGTGCAGATGTTAAGTTGCATCCTGTTAGTACCTTTGTTCAAGTTGCTGATGGCATTGTTTGCTTTGCTTTTCAATCATCTACAATTGGTGCTATTTTTGGCAACTTGGCTCAACAGAATTTGTTGGTTGGTTATGACCTACAACAAAAGACAGTGTCTTTTAAGGCTACTGATTGTACCAAAGTCTAA 1317 0.3774 MNTRCSITLFFFVICFIFPLSDALNNGFSVELIHRDSIKSPLYKPIQNKYQNIVNAARRSINRVSRFYKKSLNISPESTIVPDNAEYLMTYSVGTPPFKLYGIADTGSDIVWLQCEPCEECFNQTTPKFTPSKSSTYKNIPCSSNLCHSVRDSSCDDKNNCEYSISYGDRSHSEGDLSIDTLTLESTTGQSVPFPNTVIGCGTDNTVSFQGVSSGIVGLGGGPVSFITQLGSSIGGKFSYCLPPSLLVTETQSNSTTKLNFGDAAIVSGDDVVSTPIVKKESPVFYYLTLESFSVENKTIEFGGISSNDSRDKGNIIIDSGTTLTLLPSKFYTDLESAIVELVKLERVDDPNKIFNLCYSITSNGYDFPLITAHFDGADVKLHPVSTFVQVADGIVCFAFQSSTIGAIFGNLAQQNLLVGYDLQQKTVSFKATDCTKV 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00826 438 FunFam Aspartic proteinase CDR1 264 438 - -
Vifa4g00826 438 ProSiteProfiles Peptidase family A1 domain profile. 87 431 IPR033121 -
Vifa4g00826 438 Gene3D Acid Proteases 68 261 IPR021109 -
Vifa4g00826 438 SUPERFAMILY Acid proteases 79 435 IPR021109 -
Vifa4g00826 438 FunFam Probable aspartic protease At2g35615 67 262 - -
Vifa4g00826 438 PANTHER OS07G0603500 PROTEIN-RELATED 30 436 - -
Vifa4g00826 438 Pfam Xylanase inhibitor N-terminal 87 263 IPR032861 -
Vifa4g00826 438 Pfam Xylanase inhibitor C-terminal 286 431 IPR032799 -
Vifa4g00826 438 CDD pepsin_A_like_plant 86 435 IPR034161 -
Vifa4g00826 438 Gene3D Acid Proteases 262 438 IPR021109 -
Vifa4g00826 438 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 316 327 IPR001969 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00826 Vifa-Chr4 245566143 245567459 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00826 87 438 Miscellaneous Gene Families AT1G77480 26.371 7.83e-23 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00826 - - mtr:11411196 635.565