Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00817 ATGCTTATGGCTTCAGAGACTCAGTTCCATGTTTTGGCTGTTGATGATAGTATAGTTGACAGAATGCTGATTGAAAGGCTTCTAAAAACTTCTTCATTTCAAGTTACTACAGTGGATTCTGCTACTAAGGCTTTAAAATTTCTTGGTTTGGTTGATGATAATGCTTCAGAAATTCACCAGGAAGTAGAAGTTAATCTGATCATAACAGATTATTGTATGCCAGGAATGACTGGTTATGATCTGCTCAGAAAAATCAAGGAATCCAAATCTTTTAAAGACATACCAGTTGTGATTATGTCATCAGAGAACGTACCATCTAGAATAAATAGATGTTTGGAAGAGGGAGCTGAGGAATTCTTTCTGAAACCAGTTAAACAATCAGATGTAAACAAGCTGAAACCCCATTTGTTGAAATCAAGAGTTAATGAAGGGCAAGAATAA 441 0.3537 MLMASETQFHVLAVDDSIVDRMLIERLLKTSSFQVTTVDSATKALKFLGLVDDNASEIHQEVEVNLIITDYCMPGMTGYDLLRKIKESKSFKDIPVVIMSSENVPSRINRCLEEGAEEFFLKPVKQSDVNKLKPHLLKSRVNEGQE 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00817 146 Pfam Response regulator receiver domain 11 129 IPR001789 GO:0000160
Vifa4g00817 146 Gene3D - 10 145 - -
Vifa4g00817 146 SMART REC_2 9 136 IPR001789 GO:0000160
Vifa4g00817 146 ProSiteProfiles Response regulatory domain profile. 10 137 IPR001789 GO:0000160
Vifa4g00817 146 PANTHER TWO-COMPONENT RESPONSE REGULATOR 9 138 IPR045279 GO:0009736
Vifa4g00817 146 SUPERFAMILY CheY-like 8 131 IPR011006 -
Vifa4g00817 146 CDD REC_typeA_ARR 11 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00817 Vifa-Chr4 242900380 242901611 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00817 1 146 Response Regulator Gene Family AT2G41310 68.831 1.44e-75 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa4g00817 Response_reg 1.8e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00817 K14492 - gmx:100787436 244.202