Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00809 ATGTTTGGTTTAAGAGACTTGGTTCTCATAGCTCAAACCCCTTCATCACTTCACCAACCCATTTCATCTGATCATCCTCCTAACCTTTCTTTACCTTCCTCATCACCTCTAAGTGTTGGTCTTGGAATTTTCCCACTCCTAACTACCACTCACCCTCACATTGATCATAATAATAATCAAGACTCAAACTTTTGGAATCTCAAGATGTGTCAACCACAACAAGTGATGATGGTGATGGATTCAACGAGAAAAGGGGTTGAAGAAAATGATGAAAAGATTCAGAATTTGATGATGGGTTGTGAGGAGAACGGCGAGTTTAGGGTGTGTCAGGATTGTGGAAACAGAGCTAAGAAAGATTGTAGCTTTAAGAGATGCAGGACTTGTTGTAAAGGTCGTGGGTTTGATTGTAGTACTCACGTGAAGAGCACGTGGACTCCGGCCTCGATGCGGCGGGACCGGAATGGAGCGGTGGTGGCTGAAGGTGGTGGTGACAGTGATGGTTCTTCTGGAAGTAAGAGGCAGAGGATTTTGATCGCATCATCATCACATGATAATTTTGCTGCTACCTCTCATAGTTCAAGCTCTAATGCTGCTACTACAAGAAGCTTAAGCTTGGATATCACTAGCTCTTGTCACCAAGATGTTGGTTTCAAGCAATCATTGCCAAGATATGTGACTGCACCTGCTGTTTTCAAGTGTCATAGAGTTTCCGGCATTGGCAATGGTGATGAAGATGAAATTGCTTACTTGGCTACTGTGAATATTAATGGGCATGTGTTCAAAGGGTTTGTTTATGATCAAGGTGTTGTGGATGGAAAAGATGAAACAATGGGTTGTGTTTCAGAATTGCAACTTGGAAGTAATGGAAGTGGGAAGAGTATTAATAGGGAATGTTCTTCTTCAATTCATGTTCCAACAACTAGTGCTTATCCTGCTTCTGCATGCTGA 948 0.423 MFGLRDLVLIAQTPSSLHQPISSDHPPNLSLPSSSPLSVGLGIFPLLTTTHPHIDHNNNQDSNFWNLKMCQPQQVMMVMDSTRKGVEENDEKIQNLMMGCEENGEFRVCQDCGNRAKKDCSFKRCRTCCKGRGFDCSTHVKSTWTPASMRRDRNGAVVAEGGGDSDGSSGSKRQRILIASSSHDNFAATSHSSSSNAATTRSLSLDITSSCHQDVGFKQSLPRYVTAPAVFKCHRVSGIGNGDEDEIAYLATVNINGHVFKGFVYDQGVVDGKDETMGCVSELQLGSNGSGKSINRECSSSIHVPTTSAYPASAC 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00809 315 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 56 301 IPR007818 GO:0003700|GO:0006355
Vifa4g00809 315 NCBIfam putative zinc finger domain, LRP1 type 108 150 IPR006510 -
Vifa4g00809 315 Pfam Domain of unknown function (DUF702) 108 269 - -
Vifa4g00809 315 NCBIfam LRP1 C-terminal domain 221 269 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00809 Vifa-Chr4 240299737 240300787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00809 1 286 C2H2 Transcription Factor Family AT5G12330 38.079 1.50e-44 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Vifa4g00809 DUF702 4.1e-50 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00809 - - gmx:100790311 333.569