Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00797 ATGGAGGTGCAGGGTGGTAGAATCGACCCAAGAAGTGGTTTTCGTAGCTCTAATTCAATCTTCTACAGCAAGAGACAACCCATATCACTCCCCCCAAACCATTCCTTAGACGCCACCACTTTCATCTCCTCTCATGCACATCAAGGCCACACCGCCTTCATCGACGCCTCCACTGGCCGCCACCTCACCTACACAGAACTCTGGAGATCTGTTGAAGCTGTCACCTCCTCTCTCTCAAGCATGGGAATCAAAAAAGGAGACATTATCCTTCTTCTCTCTCCCAACTCTATCTACTTCCCGGTGGTGTGTCTTGCCGTTATGTCCCTCGGTGCCATCATCACCACCACCAACCCCCTCAATACAACTCATGAAATCGCAAAGCAGATAGCAGATTCCAAACCTGTTCTCGCCTTCACAATCTCTTCGTTGGTTTGGAAAATCATCACAACATCACCAACTCTTCCGGTCATTCTCATGGATGTCGATGGAGAGTCATCGTCATCATTGTCAAATTCAAACACACTAGAGGAAATGATGAAGAAGGAACCTGACATGAGCACCTTAAGGTCACGAGTCAACCAGGATGACACAGCTACTCTACTTTACTCATCTGGAACAACCGGACCAAGCAAAGGAGTAGTATCATCACATAAGAACCTTATAGCGATGGTTCAAAATGTGTTAACTAGGTTTAGCAAGCAAGTAGAAACATTCATTTGCACTGTTCCCATGTTTCACATATATGGCTTAGCAGTTTTCGCTACGGGACTTCTAGCTCTAGGTTCAACCATTATTATTCTCTCCAAATTCGAAATGCATGACATGCTTTCATCCATTGAGAAATACAAAGTTAATGTTCTACCACTTGTGCCGCCAATACTGGTTGTTATGCTCAACAATGCAGATGTGATTATGAGGAAGTACGACTTGAGTTCCCTTCATACGGTGCTATGTGGTGGGGCTCCTTTGAGTAAGGAAGTTACAGAAGGGTTTATTGATAAGTTTCGTAACATTGTCATTCGTCAGGGTTATGGTCTGACAGAATCGGCCGGAGTTGGGAGTTCGACAGACTGTTTGGAAGAGAGTCGGAAGTATGGAACAGCAGGGATTTTGTCTTGTTCTACAGAGGCTATGATTGTAGATGCTGAAACTGGTCAACCACTTCCGGTTAACCGAAGTGGAGAGCTTTGGCTCCGAGGTCCCACCATCATGAAAGGTTATTTCAATAACGAGGAGGCAACTAAATCAACACTTACTTCAGATGGTTGGTTAAAAACTGGAGATGTTTGCTATTTTGATTGCGATGGATTCTTATTTATCGTTGATAGGTTGAAAGAGCTAATTAAATATAAAGGATATCAGGTCCCTCCAGCTGAATTAGAGGCTTTGTTGCTAACACATTCTGCAATTTCAGATGTTGTTGTTATACCGTATCCAGATGAGGAGGTTGGACAATATCCAATGGCATATGTGGTAAGGAAGGATGGAAGTAACATATCAGGCTGTCAAATTATGGAATTTGTTGCAGGACAGGTGGCTCCATATAAAAAAATTCGAAAAGTGGCATTTATATCTTCGATACCCAAAAATCCATCTGGCAAAATTCTTAGGAAGGATCTAATCAAGCTTGCTACATCAAAACTTTAA 1647 0.4299 MEVQGGRIDPRSGFRSSNSIFYSKRQPISLPPNHSLDATTFISSHAHQGHTAFIDASTGRHLTYTELWRSVEAVTSSLSSMGIKKGDIILLLSPNSIYFPVVCLAVMSLGAIITTTNPLNTTHEIAKQIADSKPVLAFTISSLVWKIITTSPTLPVILMDVDGESSSSLSNSNTLEEMMKKEPDMSTLRSRVNQDDTATLLYSSGTTGPSKGVVSSHKNLIAMVQNVLTRFSKQVETFICTVPMFHIYGLAVFATGLLALGSTIIILSKFEMHDMLSSIEKYKVNVLPLVPPILVVMLNNADVIMRKYDLSSLHTVLCGGAPLSKEVTEGFIDKFRNIVIRQGYGLTESAGVGSSTDCLEESRKYGTAGILSCSTEAMIVDAETGQPLPVNRSGELWLRGPTIMKGYFNNEEATKSTLTSDGWLKTGDVCYFDCDGFLFIVDRLKELIKYKGYQVPPAELEALLLTHSAISDVVVIPYPDEEVGQYPMAYVVRKDGSNISGCQIMEFVAGQVAPYKKIRKVAFISSIPKNPSGKILRKDLIKLATSKL 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00797 548 Pfam AMP-binding enzyme 46 450 IPR000873 -
Vifa4g00797 548 FunFam 4-coumarate--CoA ligase 2 446 547 - -
Vifa4g00797 548 Gene3D - 446 547 IPR045851 -
Vifa4g00797 548 Pfam AMP-binding enzyme C-terminal domain 459 534 IPR025110 -
Vifa4g00797 548 Gene3D - 18 445 IPR042099 -
Vifa4g00797 548 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 15 542 - -
Vifa4g00797 548 ProSitePatterns Putative AMP-binding domain signature. 200 211 IPR020845 -
Vifa4g00797 548 CDD 4CL 30 540 - -
Vifa4g00797 548 FunFam Long-chain-fatty-acid--CoA ligase FadD 22 445 - -
Vifa4g00797 548 SUPERFAMILY Acetyl-CoA synthetase-like 44 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00797 Vifa-Chr4 235172601 235174744 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00797 8 548 Monolignol Biosynthesis Gene Families AT1G20500 62.226 0.0 702
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00797 K10526 - gmx:100811344 805.438