Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00796 ATGAACATCAAATGTCATGTTGAAAATGTCAACTTTACCGGCAATACACCATCACGAGAATTTAAGTTCACCGAGTACACCCCTCTTGAAGATTTGCAAGACATATTGTTGGACCTGCTACCTTATGGCGACAATCTCAAAGTTGTGAAGATCGAGTACCGCTCAACATCCGTTGATAAAGATGGGAAGCTTGAGTCAATCAACTGTGAGATGAAGAACGACGCTATATATATGCTATGTGGCATAGTTTTACACATATATGGTCCTAGCATGCTTCCTGTAATCGATTTGAATCTAAGCATCTTTCTTGCTGAAAGGATAACACCTCGATCTGGTAAAATTACTCACAGAGATATTGTAGTGTTCCGCTCACCTCAAAACCCTAGAAGGACTGTCACAAAGCGTGTGATTGGATTAGAGGGTGATAGCATTACATATGTCTCTAATCCTAAAAACAGTGATCATTTAACTAACTATGCACAACAATACATAAGACAAATCCACAAAATATTTTTTAATACTCATTTTCGCATCCTAATGCAAGCTGCACCGTGA 555 0.3856 MNIKCHVENVNFTGNTPSREFKFTEYTPLEDLQDILLDLLPYGDNLKVVKIEYRSTSVDKDGKLESINCEMKNDAIYMLCGIVLHIYGPSMLPVIDLNLSIFLAERITPRSGKITHRDIVVFRSPQNPRRTVTKRVIGLEGDSITYVSNPKNSDHLTNYAQQYIRQIHKIFFNTHFRILMQAAP 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00796 184 Gene3D Umud Fragment, subunit A 39 174 - -
Vifa4g00796 184 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 83 156 - -
Vifa4g00796 184 SUPERFAMILY LexA/Signal peptidase 84 162 IPR036286 -
Vifa4g00796 184 CDD S26_SPase_I 86 153 IPR019533 GO:0004252|GO:0006465
Vifa4g00796 184 Pfam Signal peptidase, peptidase S26 85 147 IPR019533 GO:0004252|GO:0006465
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00796 Vifa-Chr4 234484739 234486230 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00796 91 155 MADS-box Gene Family AT1G29960 47.692 1.89e-13 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00796 K09647 - gmx:100805997 98.2117