Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vifa4g00782 | ATGAGTAATCCAGCTGATACGGATATGGAAGATACTAAACCCTCTGTTGTAGTGGTTGATAATGGTGACCAAGCTCAGTTTCGGTTTGCTGAGTTTTCTAAGAATGAGCTAGCATTGGATGAGAAAAGCTGTAAGGAAGCAACGGATCTGTTTGGAGAAACCAAACATCTTCTCATGGCAAATGTTTCGTCAATGGGAAATGGAACGATTGAAGAAGCAGAACGGTACTGGTTTGCTTTTATTTTATACTGTATCAAGAAACTTACTCAGAAAAATGAGGAGAGTGGGAAGGAAGAGATTGAGAATACCGGTCTTACCCTGTGTCGAATATTGAGAGCAGCAAAGCTTAATATTGCGGAATTTTTCAAAGAACTTCCTCAATTTGTTGTTAAGGCTGGTCCAATTTTAAGCAATCTATATGGCCCGGATTGGGAAACCAAGCTTGAGGCCAAGGAGATGCATGCCAATACTATTCACTTGAAGATTCTTAGCAAGTATTATAAGCGTGTATTTGAAGAGTTCTTTGTGTCAACTGTTGCAAACATTGAAAGTAACTCATCTGTTACCATCCGTGTATCTGATTATCATCGCTTTGGATGGTTGCTTTTCTTGGCTCTTCGTGTACATGCTTTCAGCCGTTTCAAAGACTTGGTGACTTGCACGAATGGTTTAATTTCTATCTTGGCAATCCTAATTATTCATGTTCCGGCTCGTTTTCGGAATTTCAACATTCATGACTCTTCACGATTTGTTAAGAAAAGTGACAAAGGTGTGGACCTCCTTGCTTCACTTTGCAACTTATACAACACTTCAGAAGATGAATTGAAGAAAACCATTGAGCAAGCCAATAATTTAGTAGCAGATATATTGAAAAAGAAACCCTGTTTGGCATCTGAATGCGAAACTGAAAACCTAGAGAGTTTCGACAGAGATGGTTTAACCTATTTTAAAGATCTGATGGAGGAATCATCTCTGCTGTCTAATTTGAGTGTGTTAGAAAATGATTACGATCACATGACTCGCAACAACGGTGAACTGGATGAAAGGTTATTCATCAATGAGGATGACAGTCTACTAGCTTCAGGAAGTCTTTCCGGAGGTTCTGTTTCAGCCGGAGTTGTAAAGAGGAAATTTGATTTGATGACATCACCTACTAAAGCGATTGCAAGTCCACTTTCACCGCGCCGTTCTCCTGCATCCCATGCTAATGGCATTCCAAGTAGTGCAAATGCAGTGATTGCTGCCACCCCTGTTAGCACAGCAATGACTACGGCAAAGTGGCTTCGCACTGTCATTTCCCCACTTCCATCAAAGCCCTCACAAGAGCTGGAGCGATTCTTGACATCATGTGACAAGGATATTACAAGTGATGTAATACGCAGAGCGCAGATTATCTTGCAAGCAATATTTCCTAGTAGTCCCCTTGGTGACCGATGTGTAACTGGAAGCCTTCAAAGTGCTAATCTAATGGACAACATATGGGCGGAACAACGAAGATTAGAAGCACTGAAGTTATATTATAGGGTATTGGCAACAATGTGCAGAGCAGAAGCTCAAATACTCGGCAACAATCTAACATTGCTGCTTACTAATGAGAGGTTCCATAGGTGTATGCTTGCTTGTTCTGCAGAACTAGTCCTGGCTACTCACAAGACTGTAACGATGTTGTTCCCTGCTGTACTAGAGAGAACTGGAATCACAGCTTTTGATCTTAGCAAAGTGATAGAGAGTTTCATTAGATATGAAGAATCTCTCCCAAGAGAATTGAGGCGACATCTTAACTCACTGGAGGAGCGGCTTTTGGAGAGCTTGGTATGGGAAAAGGGTTCTTCAATGTATAATTCATTGGCAGTCGCTAGACCCGCCCTTTCTGTAGACATCAATCGGCTTGGTCTGATGGCAGAACCCATGCGATCGTTAGATGAAATCGCAATGGATATTAACTTCTCTTGTGGAGGACTCCCTCCTGTGCCTTCCTTGCCGAAGCCTGAGACGATGTCAGCACAAAATGGGGACCCCAGATCACCAAAACGGCTCTGTACTGAACATCGAAATGTGTTGGGGGAACGAAATTCTTTTACTTCACCGGTGAAAGACCGACTTCTTCACTTAAGCAACCTAAAGTCAAAACTACTCCCACCTCCTTTGCAATCAGCATTTGCAAGTCCGACAAAGCCAAATCCAGGAGGTGGAGGAGAAACATGCGCTGAAACTGGTATCAGTGTCTTTTTCAGCAAGATTGTCAAGTTGGGAGCAGTCAGAATAAGCGGAATGGTTGAAAGGCTACAATTATCTCAGCAGATAAGGGAGAATGTATACTGTCTTTTCCAGCGAATCCTAAACCAATGGACATCGCTCTTCTTCAACCGCCATATCGACCAAATCATTCTGTGTTGCTTCTATGGAGTTGCAAAGATATCACAACTGAACCTAACTTTTAGGGAGATTATATACAACTACAGAAAGCAACCCCAATGCAAACCACAAGTTTTTCGAAGCGTATTCGTCGACTGGTCATCTGCGCGCCGTAATGGATCATGCAAGCAAAGAACAGGACAGGAGCACATCGATATCATTTCATTTTACAATGAAGTTTTCATTCCCTCTGTAAAGCCATTGCTAGTTGAAATTGGCCCTGGCGGAACAACTACGAAAAGTGACCGAATACCTGAAGCTAACAACAAAAATGATGGTCATTTGGCTCAATGTCCAGGATCTCCTCGAATATCACCTTTCCCAAGCCTTCCTGATATGTCACCTAAAAAAGTTTCTGCAACACACAATGTGTATGTCTCTCCATTAAGATCATCCAAGATGGATGCTCTAATTTCACATAGCTCGAAAAGCTATTATGCATGCGTTGGGGAGAGCACACATGCTTATCAGAGCCCTTCAAAAGACCTGACTGCCATAAACAATCGATTAAACGGCACCCGGAAAGTAGTAAGAGGATCCCTCAATTTTGATGACGTTGATGTTGGCCTAGTTAGCGACTCTATGGTAGCAAACAGCCTCTATATACAAAACGGAAGTTCTGCGTCATCATCAGGTGCACCATTGAAGACTGAGCAACCTGACTCTTAA | 3084 | 0.4235 | MSNPADTDMEDTKPSVVVVDNGDQAQFRFAEFSKNELALDEKSCKEATDLFGETKHLLMANVSSMGNGTIEEAERYWFAFILYCIKKLTQKNEESGKEEIENTGLTLCRILRAAKLNIAEFFKELPQFVVKAGPILSNLYGPDWETKLEAKEMHANTIHLKILSKYYKRVFEEFFVSTVANIESNSSVTIRVSDYHRFGWLLFLALRVHAFSRFKDLVTCTNGLISILAILIIHVPARFRNFNIHDSSRFVKKSDKGVDLLASLCNLYNTSEDELKKTIEQANNLVADILKKKPCLASECETENLESFDRDGLTYFKDLMEESSLLSNLSVLENDYDHMTRNNGELDERLFINEDDSLLASGSLSGGSVSAGVVKRKFDLMTSPTKAIASPLSPRRSPASHANGIPSSANAVIAATPVSTAMTTAKWLRTVISPLPSKPSQELERFLTSCDKDITSDVIRRAQIILQAIFPSSPLGDRCVTGSLQSANLMDNIWAEQRRLEALKLYYRVLATMCRAEAQILGNNLTLLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRYEESLPRELRRHLNSLEERLLESLVWEKGSSMYNSLAVARPALSVDINRLGLMAEPMRSLDEIAMDINFSCGGLPPVPSLPKPETMSAQNGDPRSPKRLCTEHRNVLGERNSFTSPVKDRLLHLSNLKSKLLPPPLQSAFASPTKPNPGGGGETCAETGISVFFSKIVKLGAVRISGMVERLQLSQQIRENVYCLFQRILNQWTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVFVDWSSARRNGSCKQRTGQEHIDIISFYNEVFIPSVKPLLVEIGPGGTTTKSDRIPEANNKNDGHLAQCPGSPRISPFPSLPDMSPKKVSATHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNGTRKVVRGSLNFDDVDVGLVSDSMVANSLYIQNGSSASSSGAPLKTEQPDS | 1027 |
Showing 1 to 1 of 1 entries
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vifa4g00782 | 1027 | PANTHER | RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED | 23 | 1025 | IPR028309 | GO:0006357|GO:0051726 | |
| Vifa4g00782 | 1027 | SMART | DUF3452_2 | 88 | 234 | IPR024599 | - | |
| Vifa4g00782 | 1027 | Gene3D | - | 700 | 895 | - | - | |
| Vifa4g00782 | 1027 | Coils | Coil | 268 | 292 | - | - | |
| Vifa4g00782 | 1027 | Pfam | Retinoblastoma-associated protein A domain | 416 | 616 | IPR002720 | GO:0005634|GO:0051726 | |
| Vifa4g00782 | 1027 | FunFam | Retinoblastoma-related protein 1 | 690 | 907 | - | - | |
| Vifa4g00782 | 1027 | SUPERFAMILY | Cyclin-like | 738 | 914 | IPR036915 | - | |
| Vifa4g00782 | 1027 | FunFam | Retinoblastoma-related protein 1 | 419 | 606 | - | - | |
| Vifa4g00782 | 1027 | MobiDBLite | consensus disorder prediction | 658 | 679 | - | - | |
| Vifa4g00782 | 1027 | Gene3D | - | 195 | 353 | - | - |
Showing 1 to 10 of 17 entries
Functional genes information
Transcription factors information
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vifa4g00782 | K04681 | - | gmx:100779266 | 1659.43 |
Showing 1 to 1 of 1 entries