Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00778 ATGGCTTCTTCGAGAACTGTGAAGGATGTTTCACCCCACGAATTCGTCAAAGCTTACTCTGCTCACCTTAAACGATCTGGCAAGATGGAGCTTCCTGAGTGGACTGATATTGTGAAAACTGCAAAATTCAAAGAATTGGCTCCCTATGATCCTGATTGGTATTACATCAGAGCTGCTTCTATGGCAAGGAAGATCTACTTGAGAGGGGGTCTTGGTGTTGGTGCATTCCAGAGGATTTATGGTGGTAGTCAGAGGAATGGAAGTCGCCCTCCCCATTTTTGCAAGAGCAGCGGTTCTATTGCGCGTAACATTCTTCAGCAGTTGCAGAACATGAACCTCATTGAGATGGACACCAAGGGTGGCAGGAAAATTACATCCAGTGGCCGACGGGATCTCGACCAAGTTGCTGGACGAATTGTAATCGCACCTTAA 432 0.4676 MASSRTVKDVSPHEFVKAYSAHLKRSGKMELPEWTDIVKTAKFKELAPYDPDWYYIRAASMARKIYLRGGLGVGAFQRIYGGSQRNGSRPPHFCKSSGSIARNILQQLQNMNLIEMDTKGGRKITSSGRRDLDQVAGRIVIAP 143
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00778 143 Gene3D - 1 142 IPR036388 -
Vifa4g00778 143 Pfam Ribosomal protein S19e 6 140 IPR001266 GO:0003735|GO:0005840|GO:0006412
Vifa4g00778 143 ProSitePatterns Ribosomal protein S19e signature. 90 109 IPR018277 GO:0003735|GO:0005840|GO:0006412
Vifa4g00778 143 FunFam 40S ribosomal protein S19 2 142 - -
Vifa4g00778 143 SUPERFAMILY "Winged helix" DNA-binding domain 6 140 IPR036390 -
Vifa4g00778 143 PANTHER 40S RIBOSOMAL PROTEIN S19 5 138 IPR001266 GO:0003735|GO:0005840|GO:0006412
Vifa4g00778 143 SMART Ribosomal_S19e_2 6 142 IPR001266 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00778 Vifa-Chr4 229571541 229572645 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00778 1 142 Cytoplasmic Ribosomal Protein Gene Family AT5G61170 84.507 3.86e-92 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00778 K02966 - gmx:100499800 278.87