Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00772 ATGGCATCTTCAAATTCACCATGTGCAGCATGCAAGTTTCTACGCCGCAAATGCCAACCAGAATGTGCATTTGCACCTTATTTCCCACCTGATCAGCCACAAAAATTTGCGAATGTTCATAGAATTTTTGGGGCAAGTAATGTTACAAAGCTTCTCAATGATTTACACCCTCACCAACGTGAAGACGCTGTTAATTCTCTTGCTTATGAAGCTGAAATGCGACTTCGTGATCCTGTTTACGGTTGCGTAGGTGTAATTTCTCTCCTTCAACACCAACTTCGGCAGCTTCAGATGGATCTTTATTGCGCGAAATCAGAACTCTCTCGTTACCAGAGTTTAAGCATCGCAGCGGCCAATACAGGTCTCTTAACTAGTGAATCTGTTACGGCCGCTGCGACTAATTACCACCACCATACACAGAACAACACTGGTAGTGGTGGTGGTAATAACAATAACGGTATCACCTGTGATAATAACCATCATTATCATCTTCAACACCATCACTTTTTTCCTAGAGATCAACATCAACCGCATAATTTGGTGGTTAGAAACTTTGATGCTGGAATTGGAAACAACTATGATGCTAGTCTTTTGGCTATGAATATATCTGCTAGCTTAGGGCAGATCAATCAGCTTCAACATCACAGTGCCGCCGGTGGTGGTGGTGATGACCGCCGTACTGTTAACCGCTCCTAG 696 0.4339 MASSNSPCAACKFLRRKCQPECAFAPYFPPDQPQKFANVHRIFGASNVTKLLNDLHPHQREDAVNSLAYEAEMRLRDPVYGCVGVISLLQHQLRQLQMDLYCAKSELSRYQSLSIAAANTGLLTSESVTAAATNYHHHTQNNTGSGGGNNNNGITCDNNHHYHLQHHHFFPRDQHQPHNLVVRNFDAGIGNNYDASLLAMNISASLGQINQLQHHSAAGGGGDDRRTVNRS 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00772 231 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 143 - -
Vifa4g00772 231 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Vifa4g00772 231 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00772 Vifa-Chr4 226991577 226992272 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00772 2 231 AS2 family AT1G65620 60.435 4.60e-78 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa4g00772 LOB 3.5e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00772 - - mtr:25501092 375.941