Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00765 ATGGACAAGGGACCACCTCCTACCCTCTTTGTCAATGATGGTTCATTTATGGAGAGGTTCAGGCAGCTCCAACAAGAGCAGGAGAAGGGGAAAAATGCCAAACCAGAAGAATCTAAACCAGTTAAAGTTGTTTCAGGACCTCTGAATCCTAAACCCTCCATTAGTAAGGCTAATGATGCTAAGAAACCTTCTCAGGGCAGTTCCAGTGGCAAACTTGCTTTCAGCTTGAAACAAAAGTCAAAGCTTGTGCCGGCCCCTGTTAAGTTGGCCGATGACGATGAAGATGAAATAGATGCTGGTTATGTTTCAAACGATGCACCTACAAAACGACAAAAATTGGTTCAGGATGATGGCATTGAGCAAGTATCAAGACAACTTGATGTTGCACCTCCTCCCCCAAGTGATCCTACAGTGAAGAAAGTTGCTGACAAACTTGCAAGTTTTGTGGCTAAAAATGGAAGGCCATTTGAGGATGTTACACGGCAAAAGAACCCCGGGGATACACCTTTCAAGTTTTTATTTGATGTTAAATGTCCAGACTATAAATATTATGAACATCGGCTTGCTCAAGAGGAGAAGGCCCTTTCACAGTTCAAGGAACCACAGGCAAATCAAAATGTGACAAGCATTCCATCTTCCAGACCAACAAATGGTCCTCAGAGATCATCCCAGCAACATTCAACTTACCAAATCCCTGCCTCTGCTTTATATGATAGCGTTGAAGTGTCAAGGACTTCTGGATCTTCAGTTCAAGCATTTTCAGTTGGAAGCTCAGATGAGCCCAGTGGATCAACAAGTGCCAGTTCTTTAGCGCTAATGGAGTTTTACATGAAGAAAGCTGCACAAGAAGAGAAGTTCAAACAACCTAAGCATTCAAAAGATGAGATGCCCCCTCCTCCTTCTCTTCAAGTTTCAACCTTTGATGGGAAAAAGGGCCATCACATGGGTGATTATATTCCTCAGGAAGAACTTGAAAAGTTCTTGGCTAGCTGTAACGACGCTGCAGCAATGAAAGCTGCTAAGGAGGCTACAGAGAAGGCCAAAATTCAGGCGGATAATGTAGGCCACAGGCTTTTATCAAAAATGGGTTGGAAAGAAGGTGAGGGTCTAGGTGGTTCTAGGAAGGGTATTTCAGATCCTATCATGGCAGGCAATGTGAAGAAAGATAACTTGGGGGTAGGTGCTGTCCAACCTGGGGAGGTGACTCCTGAAGATGACATCTATGAGCAGTACAAAAAGAGGATGATGCTTGGCTACCGTCACAGACCGAATCCTCTGAACAATCCCCGCAAGGCTTACTATTGA 1305 0.4421 MDKGPPPTLFVNDGSFMERFRQLQQEQEKGKNAKPEESKPVKVVSGPLNPKPSISKANDAKKPSQGSSSGKLAFSLKQKSKLVPAPVKLADDDEDEIDAGYVSNDAPTKRQKLVQDDGIEQVSRQLDVAPPPPSDPTVKKVADKLASFVAKNGRPFEDVTRQKNPGDTPFKFLFDVKCPDYKYYEHRLAQEEKALSQFKEPQANQNVTSIPSSRPTNGPQRSSQQHSTYQIPASALYDSVEVSRTSGSSVQAFSVGSSDEPSGSTSASSLALMEFYMKKAAQEEKFKQPKHSKDEMPPPPSLQVSTFDGKKGHHMGDYIPQEELEKFLASCNDAAAMKAAKEATEKAKIQADNVGHRLLSKMGWKEGEGLGGSRKGISDPIMAGNVKKDNLGVGAVQPGEVTPEDDIYEQYKKRMMLGYRHRPNPLNNPRKAYY 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00765 434 ProSiteProfiles G-patch domain profile. 351 398 IPR000467 GO:0003676
Vifa4g00765 434 Pfam Surp module 140 190 IPR000061 GO:0003723|GO:0006396
Vifa4g00765 434 PANTHER ARGININE/SERINE RICH SPLICING FACTOR SF4/14 2 434 IPR040169 -
Vifa4g00765 434 MobiDBLite consensus disorder prediction 58 75 - -
Vifa4g00765 434 MobiDBLite consensus disorder prediction 283 310 - -
Vifa4g00765 434 MobiDBLite consensus disorder prediction 197 233 - -
Vifa4g00765 434 Gene3D Surp module 113 196 IPR035967 GO:0003723|GO:0006396
Vifa4g00765 434 ProSiteProfiles SURP motif repeat profile. 141 184 IPR000061 GO:0003723|GO:0006396
Vifa4g00765 434 SMART surpneu2 139 193 IPR000061 GO:0003723|GO:0006396
Vifa4g00765 434 MobiDBLite consensus disorder prediction 194 233 - -
Vifa4g00765 434 SUPERFAMILY Surp module (SWAP domain) 121 192 IPR035967 GO:0003723|GO:0006396
Vifa4g00765 434 SMART G-patch_5 349 396 IPR000467 GO:0003676
Vifa4g00765 434 Pfam G-patch domain 352 395 IPR000467 GO:0003676
Vifa4g00765 434 MobiDBLite consensus disorder prediction 24 139 - -
Vifa4g00765 434 MobiDBLite consensus disorder prediction 24 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00765 Vifa-Chr4 224367857 224371404 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00765 337 434 C2H2 Transcription Factor Family AT5G26610 32.743 7.09e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00765 K13096 - gmx:100786213 650.588